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Total 369 publications
2022-12-20 | Journal of Animal Science and Technology
Complete genome sequence of probiotic Lactobacillus johnsonii 7409N31 isolated from a healthy Hanwoo calf
Young Joon Oh, Jieun Lee, Seul Ki Lim, Min-Sung Kwon, Sulhee Lee, Sang-Pil Choi, Dohyeon Yu, Yeon-su Oh, Jinho Park, Hak-Jong Choi

https://doi.org/10.5187/jast.2022.e98
Sequencing | PacBio RS II
2022-12-13 | Archives of Microbiology
Description of Microbacterium neungamense sp. nov. isolated from a hot spring
Dariimaa Ganbat, Ga Eul Jeong, DoKyung Oh, Dong-Woo Lee, Yong-Jik Lee, Seong-Bo Kim, In-Tae Cha, Won-Jae Chi, Seul-Ki Park, Jung-Sook Lee, Sang-Jae Lee

https://doi.org/10.1007/s00203-022-03343-5
Sequencing | PacBio RS II
2022-12-09 | Fish & Shellfish Immunology
Expression profile and molecular function of beclin-1 in Epinephelus akaara in response to immune stimuli and oxidative stress
Kishanthini Nadarajapillai, H.M.V. Udayantha, Sarithaa Sellaththurai, T.D.W. Kasthuriarachchi, Gaeun Kim, Jehee Lee

https://doi.org/10.1016/j.fsi.2022.108490
Sequencing | Illumina NovaSeq6000
2022-11-29 | Experimental & Molecular Medicine
Pim1 promotes IFN-β production by interacting with IRF3
Ryeojin Ko, Jeongin Seo, Hana Park, Nawon Lee, Soo Young Lee

https://doi.org/10.1038/s12276-022-00893-y
Sequencing | Illumina NovaSeq6000
2022-11-25 | Fish & Shellfish Immunology
Thioredoxin domain-containing protein 12 (TXNDC12) in red spotted grouper (Epinephelus akaara): Molecular characteristics, disulfide reductase activities, and immune responses
H.A.C.R. Hanchapola, D.S. Liyanage, W.K.M. Omeka, Chaehyeon Lim, Gaeun Kim, Taehyug Jeong, Jehee Lee

https://doi.org/10.1016/j.fsi.2022.11.037
Sequencing | Illumina NovaSeq6000
2022-11-23 | PLoS ONE
Throughput screening of Bacillus subtilis strains that abundantly secrete surfactin in vitro identifies effective probiotic candidates
Dongho Lee, Taehoon Oh, Bongseok Kang, Jong Seok Ahn, Yangrae Cho

https://doi.org/10.1371/journal.pone.0277412
Sequencing | PacBio RS II
2022-11-12 | Genetic Resources and Crop Evolution
Population structure of sumac (Rhus coriaria L.) from Turkiye based on transcriptome-developed SSR marker
?lyas Kılıncer, Lungelo Khanyile, Kahraman Gurcan

https://doi.org/10.1007/s10722-022-01497-1
Sequencing, Bioinformatics | Library prep, Illumina HiSeq2000
2022-11-09 | GigaScience
High-quality genome assembles from key Hawaiian coral species
Timothy G Stephens, JunMo Lee, YuJin Jeong, Hwan Su Yoon, Hollie M Putnam, Eva Majerova, Debashish Bhattacharya

https://doi.org/10.1093/gigascience/giac098
Sequencing | PacBio Sequel II, Illumina NovaSeq6000
2022-11-05 | Archives of Microbiology
Sulfitobacter albidus sp. nov., isolated from marine sediment of Jeju Island
Minji Kim, In-Tae Cha, Ki-Eun Lee, Soo-Je Park

https://doi.org/10.1007/s00203-022-03305-x
Sequencing | PacBio RS II
2022-11-01 | Scientific Reports
In silico, in vitro and in vivo characterization of host-associated Latilactobacillus curvatus strains for potential probiotic applications in farmed Atlantic salmon (Salmo salar)
Hannah S. Cathers, Shrinivasrao P. Mane, Nilesh R. Tawari, Jayanth Balakuntla, German Plata, Madan Krishnamurthy, Alicia MacDonald, Marilyn Wolter, Niel Baxter, Julian Briones, Akshitha Nagireddy, Gregory Millman, Roberto E. Martin, Arvind Kumar Mahajan, Dharanesh Gangaiah

https://doi.org/10.1038/s41598-022-23009-y
Sequencing, Bioinformatics | PacBio RS II
2022-11-01 | Cells
The Immediate Early Response of Lens Epithelial Cells to Lens Injury
Samuel G. Novo, Adam P. Faranda, Mahbubul H. Shihan, Yan Wang, Ananya Garg, Melinda K. Duncan

https://doi.org/10.3390/cells11213456
Sequencing | Illumina NovaSeq6000
2022-11-01 | ISME Communications
Genomic insights into phage-host interaction in the deep-sea chemolithoautotrophic Campylobacterota, Nitratiruptor
Yukari Yoshida-Takashima, Yoshihiro Takaki, Mitsuhiro Yoshida, Yi Zhang, Takuro Nunoura, Ken Takai

https://doi.org/10.1038/s43705-022-00194-5
Sequencing | PacBio Sequel
2022-10-27 | Microorganisms
2,5-Diketo-D-Gluconate Hyperproducing Gluconobacter sphaericus SJF2-1 with Reporting Multiple Genes Encoding the Membrane-Associated Flavoprotein-Cytochrome c Complexed Dehydrogenases
Haelim Son, Sang-Uk Han, Kyoung Lee

https://doi.org/10.3390%2Fmicroorganisms10112130
Sequencing | PacBio RS II, Illumina NovaSeq6000
2022-10-27 | FEMS Microbiology Letters
Transcriptomic analysis of lignocellulose degradation by Streptomyces coelicolor A3(2) and elicitation of secondary metabolites production
Ludovic Besaury, Jean Fromentin, Julian Detain, Carine Machado Rodrigues, Dominique Harakat, Caroline Remond

https://doi.org/10.1093/femsle/fnac101
Sequencing | Illumina NovaSeq6000
2022-10-12 | Fish & Shellfish Immunology
Insight into the molecular structure and function of peptidoglycan recognition protein SC2 (PGRP-SC2) from Amphiprion clarkii: Investigating the role in innate immunity
Sarithaa Sellaththurai, Subothini Ganeshalingam, Sumi Jung, Ji Yong Choi, Dae-Jung Kim, Jehee Lee

https://doi.org/10.1016/j.fsi.2022.10.014
Sequencing | Illumina NovaSeq6000
2022-10-01 | Blood Advances
Genetically determining individualized clinical reference ranges for the biomarker tryptase can limit unnecessary procedures and unmask myeloid neopla는
Jack Chovanec, Ilker Tunc, Jason Hughes, Joseph Halstead, Allyson Mateja, Yihui Liu, Michael P. O’Connell, Jiwon Kim, Young Hwan Park, Qinlu Wang, Quang Le, Mehdi Pirooznia, Neil N. Trivedi, Yun Bai, Yuzhi Yin, Amy P. Hsu, Josh McElwee, Sheryce Lassiter, Celeste Nelson, Judy Bandoh, Thomas DiMaggio, Julij ?elb, Matija Rijavec, Melody C. Carter, Hirsh D. Komarow, Vito Sabato, Joshua Steinberg, Kurt M. Hafer, Elizabeth Feuille, Christopher S. Hourigan, Justin Lack, Paneez Khoury, Irina Maric, Roberta Zanotti, Patrizia Bonadonna, Lawrence B. Schwartz, Joshua D. Milner, Sarah C. Glover, Didier G. Ebo, Peter Koro?ec, George H. Caughey, Erica H. Brittain, Ben Busby, Dean D. Metcalfe, Jonathan J. Lyons.

https://doi.org/10.1182/bloodadvances.2022007936
Sequencing, Bioinformatics | PacBio
2022-09-30 | Research Square
Phenotypic characterization of single CD4+ T cells harboring genetically intact and inducible HIV genomes
Dufour C, Richard C, Pardons M, Massanella M, Ackaoui A, Murrell B, Routy B, Thomas R, Routy J, Fromentin R, Chomont N

https://doi.org/10.21203/rs.3.rs-2086397/v1
Sequencing | PacBio Sequel, Sequel II
2022-09-30 | Korean Journal of Microbiology
Complete genome sequence analysis of Photobacterium atrarenae GJH2-4 reveals its genetic capability for benzene degradation isolated from marine environment
Minji Kim, Soo-Je Park

https://doi.org/10.7845/kjm.2022.2046
Sequencing | PacBio Sequel II
2022-09-29 | Biotechnology and Bioprocess Engineering
Pan-genome Analysis Reveals Comparative Genomic Features of Central Metabolic Pathways in Methylorubrum extorquens
Gyu Min Lee, Zoe K. Scott-Nevros, Sang-Mok Lee, Donghyuk Kim

https://doi.org/10.1007/s12257-022-0154-1
Sequencing | PacBio RS II
2022-09-28 | Microbiome
Marine DNA methylation patterns are associated with microbial community composition and inform virus-host dynamics
Hoon Je Seong, Simon Roux, Chung Yeon Hwang, Woo Jun Sul

https://doi.org/10.1186/s40168-022-01340-w
Sequencing | PacBio RS II
2022-09-26 | Microbiology Resource Announcements
Genome Sequences of the Human-Skin-Originated Brevundimonas albigilva TT17 and the Soil-Originated B. albigilva KEME 9005-016T
Haelim Son, Seung-Yoon Oh, Kyoung Lee

https://doi.org/10.1128/mra.00776-22
Sequencing | Illumina NovaSeq6000
2022-09-23 | Frontiers in Microbiology
Whole-genome sequence analysis for evaluating the safety and probiotic potential of Lactiplantibacillus pentosus 9D3, a gamma-aminobutyric acid (GABA)-producing strain isolated from Thai pickled weed
Nachon Raethong, Chalat Santivarangkna, Wonnop Visessanguan, Pannita Santiyanont, Wuttichai Mhuantong, Nipa Chokesajjawatee

https://doi.org/10.3389/fmicb.2022.969548
Sequencing | PacBio RS II
2022-09-19 | Cancers
RNA-seq and ChIP-seq Identification of Unique and Overlapping Targets of GLI Transcription Factors in Melanoma Cell Lines
Matea Kurtovi?, Nikolina Pite?a, Nenad Bartoni?ek, Petar Ozreti?, Vesna Musani, Josipa ?onka?, Tina Petri?, Cecile King, Maja Sabol

https://doi.org/10.3390/cancers14184540
Sequencing | Illumina NovaSeq6000
2022-09-19 | Horticulture Research
High-quality chromosome-scale genomes facilitate effective identification of large structural variations in hot and sweet peppers
Joung-Ho Lee, Jelli Venkatesh, Jinkwan Jo, Siyoung Jang, Geon Woo Kim, Jung-Min Kim, Koeun Han, Nayoung Ro, Hea-Young Lee, Jin-Kyung Kwon, Yong-Min Kim, Tae-Ho Lee, Doil Choi, Allen Van Deynze, Theresa Hill, Nir Kfir, Aviad Freiman, Nelson H Davila Olivas, Yonatan Elkind, Ilan Paran, Byoung-Cheorl Kang

https://doi.org/10.1093/hr/uhac210
Sequencing | PacBio Sequel
2022-09-14 | International Journal of Molecular Sciences
Comparison of Gene Expression Changes in Three Wheat Varieties with Different Susceptibilities to Heat Stress Using RNA-Seq Analysis
Myoung Hui Lee, Kyeong-Min Kim, Wan-Gyu Sang, Chon-Sik Kang, Changhyun Choi

https://doi.org/10.3390/ijms231810734
Sequencing | Illumina NovaSeq6000
2022-09-13 | Archives of Phytopathology and Plant Protection
Genome sequencing of eggplant reveals Eggplant mild leaf mottle virus existence with associated two endogenous viruses in diseased eggplant in Iraq
Bahaa Khaffajah, Osamah Alisawi, Fadhl Al Fadhl

https://doi.org/10.1080/03235408.2022.2123601
Sequencing | Illumina NovaSeq6000
2022-09-13 | Horticulture Research
Genomic selection with fixed-effect markers improves the prediction accuracy for Capsaicinoid contents in Capsicum annuum
Geon Woo Kim, Ju-Pyo Hong, Hea-Young Lee, Jin-Kyung Kwon, Dong-Am Kim, Byoung-Cheorl Kang

https://doi.org/10.1093/hr/uhac204
Sequencing | Illumina NextSeq500
2022-09-06 | Genome Biology and Evolution
Comparative Genome and Evolution Analyses of an Endangered Stony Coral Species Dendrophyllia cribrosa Near Dokdo Islands in the East Sea
Jungeun Kim, Jae Pil Choi, Min Sun Kim, Yejin Jo, Won Gi Min, Seonock Woo, Seungshic Yum, Jong Bhak

https://doi.org/10.1093/gbe/evac132
Sequencing | Library prep, PacBio RS II, Illumina NovaSeq6000
2022-09-05 | MITOCHONDRIAL DNA PART B
The complete mitochondrial genome of the sand dollar Astriclypeus mannii (Verrill, 1867) (Echinoidea: Astriclypeidae) in the subtidal sand flat in Jeju Island off the south coast of Korea
Jong-Seop Shin, Chi-une Song, Hyeongwoo Choi, Kae Kyoung Kwon, Do-Hyung Kang, Seong-il Eyun, Kwang-Sik Choi

https://doi.org/10.1080/23802359.2022.2116946
Sequencing | Illumina NovaSeq6000
2022-09-02 | Archives of Microbiology
Genomic sequence of the non-pathogen Neisseria sp. strain MA1-1 with antibiotic resistance and virulence factors isolated from a head and neck cancer patient
Eui Tae Kim, Young Suk Kim, Soo-Je Park

https://doi.org/10.1007/s00203-022-03212-1
Sequencing | Illumina NovaSeq6000
2022-08-23 | BMC Genomics
Whole-genome sequencing and analysis of Streptomyces strains producing multiple antinematode drugs
Jeong Sang Yi, Jung Min Kim, Min-Kyoung Kang, Jong Hoon Kim, Hang Su Cho, Yeon Hee Ban, Myoung Chong Song, Kwang-Hee Son, Yeo Joon Yoon

https://doi.org/10.1186/s12864-022-08847-4
Sequencing | PacBio Sequel, Illumina NovaSeq6000
2022-08-15 | Microbiology Resource Announcements
Complete Genome Sequence of Micrococcus yunnanensis TT9, Isolated from a Healthy Volunteer
Yujin Choi, Haelim Son, Kyoung Lee

https://doi.org/10.1128/mra.00652-22
Sequencing, Bioinformatics | Illumina NovaSeq6000
2022-08-15 | mBio
A Two-Component-System-Governed Regulon That Includes a β-Lactamase Gene is Responsive to Cell Envelope Disturbance
Dongju Lee, Jongwook Park, Hyojeong Yi, Kwang-Hwi Cho, Heenam Stanley Kim

https://doi.org/10.1128/mbio.01749-22
Sequencing | Illumina NovaSeq6000
2022-08-11 | bioRxiv
A rapid alkalinization factor-like peptide EaF82 impairs tapetum degeneration during pollen development
Chiu-Yueh Hung, Farooqahmed S. Kittur, Keely N. Wharton, Jianjun Chen, Makendra L. Umstead, D’Shawna B. Burwell, Martinique Thomas, Qi Qi, Jianhui Zhang, Carla E. Oldham, Kent O. Burkey, Jiahua Xie

https://doi.org/10.1101/2022.08.11.503650
Sequencing | Illumina NextSeq500
2022-07-26 | Research Square
Safety and efficacy of host-associated Latilactobacillus curvatus strains for potential probiotic applications in farmed Atlantic salmon (Salmo salar)
Hannah S. Cathers, Shrinivasrao P Mane, Nilesh Ramesh Tawari, Jayanth Balakuntla

https://doi.org/10.21203/rs.3.rs-1847801/v1
Sequencing, Bioinformatics | PacBio RS II
2022-07-01 | Research Square
The genome size estimation and telomeric-repeat motifs of thirteen Arctic plants
Jun Kim, Moonkyo Kim, Yoo Kyung Lee

https://doi.org/10.21203/rs.3.rs-1783809/v1
Sequencing | Illumina NovaSeq6000
2022-06-29 | Genes
Dynamics of Gut Microbiome and Transcriptome in Korea Native Ricefish (Oryzias latipes) during Chronic Antibiotics Exposure
Ju Bin Yoon, Sungmin Hwang, Jun Hyeok Yang, Seungki Lee, Woo Young Bang, Ki Hwan Moon

https://doi.org/10.3390/genes13071243
Sequencing | Illumina MiSeq, NovaSeq6000
2022-06-25 | Scientific Reports
The first long-read nuclear genome assembly of Oryza australiensis, a wild rice from northern Australia
Aaron L. Phillips, Scott Ferguson, Nathan S. Watson-Haigh, Ashley W. Jones, Justin O. Borevitz, Rachel A. Burton, Brian J. Atwell

https://doi.org/10.1038/s41598-022-14893-5
Sequencing | Library prep, PacBio Sequel II
2022-06-19 | Genes
Co-Expression Analysis Reveals Differential Expression of Homologous Genes Associated with Specific Terpenoid Biosynthesis in Rehmannia glutinosa
Ji-Nam Kang, Jong-Won Han, So-Hee Yang, Si-Myung Lee

https://doi.org/10.3390/genes13061092
Sequencing | PacBio Sequel
2022-06-18 | Scientific Reports
Comparative genomic analysis of?Streptomyces rapamycinicus?NRRL 5491 and its mutant overproducing rapamycin
Hee-Geun Jo, Joshua Julio Adidjaja, Do-Kyung Kim, Bu-Soo Park, Namil Lee, Byung-Kwan Cho, Hyun Uk Kim, Min-Kyu Oh

https://doi.org/10.1038/s41598-022-14199-6
Sequencing | PacBio, Illumina
2022-06-16 | Marine Drugs
Taeanamides A and B, Nonribosomal Lipo-Decapeptides Isolated from an Intertidal-Mudflat-Derived Streptomyces sp
Jinsheng Cui, Eunji Kim,Dong Hyun Moon, Tae Ho Kim, Ilnam Kang, Yeonjung Lim, Daniel Shin, Sunghoon Hwang, Young Eun Du, Myoung Chong Song, Munhyung Bae, Jang-Cheon Cho, Jichan Jang, Sang Kook Lee , Yeo Joon Yoon, Dong-Chan Oh

https://doi.org/10.3390/md20060400
Sequencing | PacBio RS II, Illumina NovaSeq6000
2022-06-15 | Water Research
Abundance, diversity, and host assignment of total, intracellular, and extracellular antibiotic resistance genes in riverbed sediments
A.S. Deshpande, N.L. Fahrenfeld

https://doi.org/10.1016/j.watres.2022.118363
Sequencing | Illumina NovaSeq6000
2022-06-03 | Archives of Microbiology
Bacteroides humanifaecis sp. nov., isolated from faeces of healthy Korean
Han Sol Kim, Ji-Sun Kim, Min Kuk Suh, Mi Kyung Eom, Ju Huck Lee, Seung-Hwan Park, Se Won Kang, Dong Ho Lee, Hyuk Yoon, Je Hee Lee, Jung-Sook Lee

https://doi.org/10.1007/s00203-022-02967-x
Sequencing | PacBio RS II
2022-06-02 | Cell Stem Cell
Recapitulation of endogenous 4R tau expression and formation of insoluble tau in directly reprogrammed human neurons
Lucia S. Capano, Chihiro Sato, Elena Ficulle, Anan Yu, Kanta Horie, Ji-Sun Kwon, Kyle F.Burbach, Nicolas R. Barthelemy, Susan G.Fox, Celeste M. Karch, Randall J. Bateman, Henry Houlden, Richard I. Morimoto, David M. Holtzman, Karen E. Duff, Andrew S. Yoo

https://doi.org/10.1016/j.stem.2022.04.018
Sequencing | Illumina NovaSeq6000
2022-06-01 | Investigative Ophthalmology & Visual Science
The adult human lens transcriptome changes with age
Melinda K Duncan, Adam Faranda, Samuel G Novo, Justin d'Antin, Yan Wang, Mahbubul H Shihan

https://iovs.arvojournals.org/article.aspx?articleid=2781192
Sequencing | Illumina
2022-06-01 | Fish & Shellfish Immunology
Molecular cloning, expression analysis of interleukin 17D (cysteine knot cytokine) from Amphiprion clarkii and their functional characterization and NFκB pathway activation using FHM cells
D.S. Liyanage, W.K.M. Omeka, Kishanthini Nadarajapillai, Chaehyeon Lim, Hyerim Yang, Ji Young Choi, Kyong Min Kim, Jae Koo Noh, Taehyug Jeong, Jehee Lee

https://doi.org/10.1016/j.fsi.2022.05.047
Sequencing | Library prep, Illumina NovaSeq6000
2022-06-01 | Science Advances
Light-activated molecular machines are fast-acting broad-spectrum antibacterials that target the membrane
Ana L. Santos, Dongdong Liu, Anna K. Reed, Aaron M. Wyderka, Alexis van Venrooy, John T. Li, Victor D. Li, Mikita Misiura, Olga Samoylova, Jacob L. Beckham, Ciceron Ayala-Orozco, Anatoly B. Kolomeisky, Lawrence B. Alemany, Antonio Oliver, George P. Tegos, James M. Tour

https://doi.org/10.1126%2Fsciadv.abm2055
Sequencing | Library prep, Illumina NovaSeq6000
2022-05-31 | International Journal of Systematic and Evolutionary Microbiology
Chryseobacterium faecale sp. nov., isolated from camel feces
Yongjun Son?, Jihyeon Min?, Woojun Park

https://doi.org/10.1099/ijsem.0.005405
Sequencing | Illumina NovaSeq6000
2022-05-14 | Biochemical and Biophysical Research Communications
BMP4 signaling plays critical roles in self-renewal of R2i mouse embryonic stem cells
Sara Taleahmad, Ali Salari, Azam Samadian, Se Hyun Chae, Daehee Hwang, Bonghee Lee, Delger Bayasaikhan, Govigerel Bayarsaikhan, Jaesuk Lee, Ji Hwan Park, Seyedeh-Nafiseh Hassani Hossein Baharvand, Ghasem Hosseini Salekdeh

https://doi.org/10.1016/j.bbrc.2022.05.036
Sequencing | Illumina HiSeq2500
2022-05-07 | Journal of Dermatological Science
Nicotinamide mononucleotide reduces melanin production in aged melanocytes by inhibiting cAMP/Wnt signaling
Sofia Brito, Jin-Myoung Baek, Byungsun Cha, Hyojin Heo, Su-Hyun Lee, Lei Lei, So Young Jung, So Min Lee, Sang Hun Lee, Byeong-Mun Kwak, Sehyun Chae, Mi-Gi Lee, Bum-Ho Bin

https://doi.org/10.1016/j.jdermsci.2022.05.002
Sequencing | Illumina NovaSeq6000
2022-05-06 | Science Immunology
Recall of B cell memory depends on relative locations of prime and boost immunization
Masayuki Kuraoka, Chen-Hao Yeh, Goran Bajic, Ryutaro Kotaki, Shengli Song, Ian Windsor, Stephen C. Harrison, Garnett Kelsoe

https://doi.org/10.1126%2Fsciimmunol.abn5311
Sequencing | PacBio
2022-05-03 | Bioengineering & Translational Medicine
Hyperelastic, shape-memorable, and ultra-cell-adhesive degradable polycaprolactone-polyurethane copolymer for tissue regeneration
Suk-Min Hong, Ji-Young Yoon, Jae-Ryung Cha, Junyong Ahn, Nandin Mandakhbayar, Jeong Hui Park, Junseop Im, Gangshi Jin, Moon-Young Kim, Jonathan C. Knowles, Hae-Hyoung Lee, Jung-Hwan Lee, Hae-Won Kim

https://doi.org/10.1002/btm2.10332
Sequencing | Library prep, Illumina NovaSeq6000
2022-04-21 | International Journal of Systematic and Evolutionary Microbiology
Rhizorhabdus phycosphaerae sp. nov., isolated from the phycosphere of Microcystis aeruginosa
Minkyung Kim?, Junshik Bae?, Woojun Park

https://doi.org/10.1099/ijsem.0.005324
Sequencing | PacBio
2022-04-19 | Frontiers in Cell and Developmental Biology
A Stage-Specific OTX2 Regulatory Network and Maturation-Associated Gene Programs Are Inherent Barriers to RPE Neural Competency
Jared A. Tangeman, J. Raul Perez-Estrada, Emily Van Zeeland, Lin Liu, Alexandra Danciutiu, Erika Grajales-Esquivel, Byran Smucker, Chun Liang, Katia Del Rio-Tsonis

https://doi.org/10.3389/fcell.2022.875155
Sequencing | Library prep, Illumina NovaSeq6000
2022-04-15 | Molecules and Cells
E3 ligase BRUTUS Is a Negative Regulator for the Cellular Energy Level and the Expression of Energy Metabolism-Related Genes Encoded by Two Organellar Genomes in Leaf Tissues
Bongsoo Choi,?Do Young Hyeon,?Juhun Lee,?Terri A. Long,?Daehee Hwang,?Inhwan Hwang

https://doi.org/10.14348%2Fmolcells.2022.2029
Sequencing | Illumina HiSeq2500
2022-04-14 | Research Square
Genome Sequencing-Based Evolutionary Prediction of Glycan-Adhering Lectins and Experimental Evaluation of a Lectin (FimH) Inhibitor Using an Enterohemorrhagic Escherichia coli Strain Isolated in Korea
Park J, Kim C, Cho S

https://doi.org/10.21203/rs.3.rs-1548018/v1
Sequencing | Library prep, Thermo Fisher Scientific Ion Torrent, PacBio RS II
2022-04-01 | Molecular Ecology Resources
A chromosome-scale genome assembly and annotation of the spring orchid (Cymbidium goeringii)
Oksung Chung, Jungeun Kim, Dan Bolser, Hak-Min Kim, Je Hoon Jun, Jae-Pil Choi, Hyun-Do Jang, Yun Sung Cho, Jong Bhak, Myounghai Kwak

https://doi.org/10.1111/1755-0998.13537
Sequencing | PacBio
2022-03-31 | Journal of Microbiology
Lysobacter ciconiae sp. nov., and Lysobacter avium sp. nov., isolated from the faeces of an Oriental stork
So-Yeon Lee, Pil Soo Kim, Hojun Sung, Dong-Wook Hyun, Jin-Woo Bae

https://doi.org/10.1007/s12275-022-1647-5
Sequencing | PacBio RS II
2022-03-30 | Nature Communications
Tissue extracellular matrix hydrogels as alternatives to Matrigel for culturing gastrointestinal organoids
Suran Kim, Sungjin Min, Yi Sun Choi, Sung-Hyun Jo, Jae Hun Jung, Kyusun Han, Jin Kim, Soohwan An, Yong Woo Ji, Yun-Gon Kim, Seung-Woo Cho

https://doi.org/10.1038/s41467-022-29279-4
Sequencing | Library prep, Illumina NovaSeq6000
2022-03-03 | Clinical Oral Investigations
The implication of holocytochrome c synthase mutation in Korean familial hypoplastic amelogenesis imperfecta
Hyejin Choi,?Kwanghwan Lee,?Donghyo Kim,?Sanguk Kim,?Jae Hoon Lee?

https://doi.org/10.1007/s00784-022-04413-0
Sequencing | Library prep, Illumina NovaSeq6000
2022-03-03 | Diversity
Photobacterium halophilum sp. nov. and a Salt-Loving Bacterium Isolated from Marine Sediment
Minji Kim, Ki-Eun Lee, In-Tae Cha, Soo-Je Park

https://doi.org/10.3390/d14030188
Sequencing | PacBio RS II
2022-02-18 | Archives of Microbiology
Larkinella humicola sp. nov., a gamma radiation-resistant bacterium isolated from soil
Yuna Park, Leonid N. Ten, Young Koung Lee, Hee?Young Jung, Myung Kyum Kim

https://doi.org/10.1007/s00203-022-02790-4
Sequencing | Illumina NovaSeq6000
2022-02-16 | Frontiers in Marine Science
Draft Assembled Genome of Walleye Pollock (Gadus chalcogrammus)
Eun Soo Noh, Byeong-chul Kang, Juyeon Kim, Ji-Hyeon Jeon, Young-Ok Kim, Soon-Gyu Byun, Woo-Jin Kim, Bo-Hye Nam

https://doi.org/10.3389/fmars.2022.744941
Sequencing | PacBio, Illumina
2022-02-03 | Communications Chemistry
The ubiquitous catechol moiety elicits siderophore and angucycline production in Streptomyces
Doris A. van Bergeijk, Somayah S. Elsayed, Chao Du, Isabel Nunez Santiago, Anna M. Roseboom, Le Zhang, Victor J. Carrion, Herman P. Spaink, Gilles P. van Wezel

https://doi.org/10.1038/s42004-022-00632-4
Sequencing | PacBio RS II
2022-02-02 | Nature Communications
Constitutive activation of canonical Wnt signaling disrupts choroid plexus epithelial fate
Arpan Parichha, Varun Suresh, Mallika Chatterjee, Aditya Kshirsagar, Lihi Ben-Reuven, Tsviya Olender, M. Mark Taketo, Velena Radosevic, Mihaela Bobic-Rasonja, Sara Trnski, Michael J. Holtzman, Nata?a Jovanov-Milosevic, Orly Reiner, Shubha Tole

https://doi.org/10.1038/s41467-021-27602-z
Sequencing | Library prep, Illumina NovaSeq6000
2022-02-01 | Marine Pollution Bulletin
Molecular evidence for suppression of swimming behavior and reproduction in the estuarine rotifer Brachionus koreanus in response to COVID-19 disinfectants
Eun-Ji Won, Eunjin Byeon, Young Hwan Lee, Haksoo Jeong, Yoseop Lee, Min-Sub Kim, Hyeong-Wook Jo, Joon-Kwan Moon, Minghua Wang, Jae-Seong Lee, Kyung-Hoon Shin

https://doi.org/10.1016/j.marpolbul.2022.113396
Sequencing | Library prep, Illumina NovaSeq6000
2022-02-01 | Bioactive Materials
Bio-printing of aligned GelMa-based cell-laden structure for muscle tissue regeneration
Hanjun Hwangboa, Hyeongjin Lee, Eun-Ju Jin, JaeYoon Lee, Yunju Job, Dongryeol Ryu, GeunHyung Kim

https://doi.org/10.1016/j.bioactmat.2021.06.031
Sequencing, Bioinformatics | Library prep, Illumina NovaSeq6000
2022-01-26 | PLoS ONE
In silico, in vitro and in vivo safety evaluation of Limosilactobacillus reuteri strains ATCC PTA-126787 & ATCC PTA-126788 for potential probiotic applications
Dharanesh Gangaiah, Shrinivasrao P. Mane, Nilesh R. Tawari, Nallakannu Lakshmanan, Valerie Ryan, Alyssa Volland, Dwi Susanti, Milind Patel, Abraham Abouzeid, Emily B. Helmes, Arvind Kumar

https://doi.org/10.1371/journal.pone.0262663
Sequencing | PacBio RS II
2022-01-23 | Antonie van Leeuwenhoek
Aggregatimonas sangjinii gen. nov., sp. nov., a novel silver nanoparticle synthesizing bacterium belonging to the family Flavobacteriaceae
Dawoon Chung, Jaejoon Jung, Jaoon Young Hwan Kim, Kyung Woo Kim, Yong Min Kwon

https://doi.org/10.1007/s10482-021-01700-w
Sequencing | PacBio RS II, Illumina NovaSeq6000
2022-01-17 | International Journal of Systematic and Evolutionary Microbiology
Aquibium microcysteis gen. nov., sp. nov., isolated from a Microcystis aeruginosa culture and reclassification of Mesorhizobium carbonis as Aquibium carbonis comb. nov. and Mesorhizobium oceanicum as Aquibium oceanicum comb. Nov
Minkyung Kim?, Wonjae Kim?, Woojun Park

https://doi.org/10.1099/ijsem.0.005230
Sequencing | PacBio
2022-01-15 | Behavior Genetics
Age Effects Aggressive Behavior: RNA-Seq Analysis in Cattle with Implications for Studying Neoteny Under Domestication
Paulina G. Eusebi, Natalia Sevane, Thomas O’Rourke, Manuel Pizarro, Cedric Boeckx, Susana Dunner

https://doi.org/10.1007/s10519-021-10097-1
Sequencing | Library prep, Illumina NovaSeq6000
2022-01-15 | Aging
Dietary curcumin restores insulin homeostasis in diet-induced obese aged mice
Su-Jeong Lee, Prabha Chandrasekran, Caio Henrique Mazucanti, Jennifer F. O’Connell, Josephine M. Egan, Yoo Kim

https://doi.org/10.18632%2Faging.203821
Sequencing | Library prep, Illumina NovaSeq6000
2022-01-06 | Fish & Shellfish Immunology
Molecular characterization and expression profiling of tandem-repeat galectin-8 from red-spotted grouper (Epinephelus akaara): Potential antibacterial, antiviral, and wound healing activities
Subothini Ganeshalingam, W.M. Gayashani Sandamalika, Chaehyeon Lim, Hyerim Yang, D.S. Liyanage, Kishanthini Nadarajapillai, Taehyug Jeong, Jehee Lee

https://doi.org/10.1016/j.fsi.2021.12.056
Sequencing | Library prep, Illumina NovaSeq6000
2022-01-04 | Frontiers in Immunology
Modulation of Host Immune Response during Leishmania infantum Natural Infection: A Whole-Transcriptome Analysis of the Popliteal Lymph Nodes in Dogs
Carolina R. Sanz, Guadalupe Miro,?Natalia Sevane,?Armando Reyes-Palomares,?Susana Dunner

https://doi.org/10.3389%2Ffimmu.2021.794627
Sequencing | Library prep, Illumina NovaSeq6000
2022-01-03 | Frontiers in Marine Science
First Draft Genome of a Mud Loach (Misgurnus mizolepis) in the Family Cobitidae
Younhee Shin, Eun Soo Noh, Ji-Hyeon Jeon, Ga-Hee Shin, Eun Mi Kim, Young-Ok Kim, Hyeongsu Kim, Hyungtaek Jung, Bo-Hye Nam

https://doi.org/10.3389/fmars.2021.799148
Sequencing | Library prep, PacBio Sequel, Illumina NovaSeq6000
2022-01-01 | Comparative Biochemistry and Physiology Part B
Molecular characterization of fish cytokine IL-17C from Amphiprion clarkii and its immunomodulatory effects on the responses to pathogen-associated molecular patterns and bacterial challenges
D.S. Liyanage, W.K.M. Omeka, Hyerim Yang, Chaehyeon Lim, Cheol Young Choi, Jehee Lee

https://doi.org/10.1016/j.cbpb.2021.110669
Sequencing | Library prep, Illumina NovaSeq6000
2022-01-01 | Agriculture
Identification of Grain Size-Related QTLs in Korean japonica Rice Using Genome Resequencing and High-Throughput Image Analysis
Yunji Shin, Yong Jae Won, Chaewon Lee, Kyeong-Seong Cheon, Hyoja Oh, Gang-Seob Lee, Jeongho Baek, In Sun Yoon, Song Lim Kim, Young-Soon Cha, Kyung-Hwan Kim, Hyeonso Ji

https://doi.org/10.3390/agriculture12010051
Sequencing | PacBio RS II
2021-12-20 | bioRxiv
Recall of B cell memory depends on relative locations of prime and boost
Masayuki Kuraoka, Chen-Hao Yeh, Goran Bajic, Ryutaro Kotaki, Shengli Song, Stephen C. Harrison, Garnett Kelsoe

https://doi.org/10.1101/2021.12.17.472609
Sequencing | PacBio Sequel
2021-11-24 | Applied and Environmental Microbiology
Metagenomic and Metatranscriptomic Characterization of a Microbial Community That Catalyzes Both Energy-Generating and Energy-Storing Electrode Reactions
Rebecca L. Mickol, Brian J. Eddie, Anthony P. Malanoski, Matthew D. Yates, Leonard M. Tender, Sarah M. Glaven

https://doi.org/10.1128/AEM.01676-21
Sequencing | Library prep, Illumina NovaSeq6000
2021-11-22 | bioRxiv
Ploidy variation and its implications for reproduction and population dynamics in two sympatric Hawaiian coral species
Timothy G. Stephens, Emma L. Strand, Amin R. Mohamed, Amanda Williams, Eric N. Chiles, Xiaoyang Su, Debashish Bhattacharya, Hollie M. Putnam

https://doi.org/10.1101/2021.11.21.469467
Sequencing | Library prep, PacBio Sequel II, Illumina NovaSeq6000, Dovetail Omni-C
2021-11-19 | Frontiers in Genetics
Chromosome-Scale Genome Assemblies of Two Korean Cucumber Inbred Lines
Kihwan Song,?Younhee Shin,?Myunghee Jung,?Sathiyamoorthy Subramaniyam,?Keun Pyo Lee,?Eun-A Oh,?Jin Ho Jeong,?Jeong-Gu Kim?

https://doi.org/10.3389%2Ffgene.2021.733188
Sequencing | Library prep, PacBio Sequel, Illumina HiSeq2500
2021-11-17 | BMC Genomics
Telomere-to-telomere genome assembly of asparaginase-producing Trichoderma simmonsii
Dawoon Chung, Yong Min Kwon, Youngik Yang

https://doi.org/10.1186/s12864-021-08162-4
Sequencing | Library prep, Illumina NovaSeq6000
2021-11-08 | JCI Insight
αVβ8 integrin targeting to prevent posterior capsular opacification
Mahbubul H. Shihan,?Samuel G. Novo,?Yan Wang,?Dean Sheppard,?Amha Atakilit,?Thomas D. Arnold,?Nicole M. Rossi,?Adam P. Faranda,?Melinda K. Duncan

https://doi.org/10.1172%2Fjci.insight.145715
Sequencing | Illumina NovaSeq6000
2021-10-28 | Endocrinology and Metabolism
Whole-Exome Sequencing in Papillary Microcarcinoma: Potential Early Biomarkers of Lateral Lymph Node Metastasis
Mijin Kim, Chae Hwa Kwon, Min Hee Jang, Jeong Mi Kim, Eun Heui Kim, Yun Kyung Jeon, Sang Soo Kim, Kyung-Un Choi, In Joo Kim, Meeyoung Park, Bo Hyun Kim

https://doi.org/10.3803%2FEnM.2021.1132
Sequencing | Illumina NovaSeq6000
2021-10-20 | Frontiers in Microbiology
Multi-Omics Characterization of Host-Derived Bacillus spp. Probiotics for Improved Growth Performance in Poultry
Dwi Susanti, Alyssa Volland, Nilesh Tawari, Nielson Baxter, Dharanesh Gangaiah, German Plata, Akshitha Nagireddy, Troy Hawkins, Shrinivasrao P. Mane, Arvind Kumar

https://doi.org/10.3389/fmicb.2021.747845
Sequencing | PacBio RS II
2021-10-19 | Mitochondrial DNA Part B
The complete chloroplast genome sequence of Viola verecunda (Violaceae)
Myounghai?Kwak

https://doi.org/10.1080/23802359.2021.1997102
Sequencing | Illumina NovaSeq6000
2021-09-30 | Journal of Animal Science and Technology
Complete genome sequence of Lactobacillus amylovorus 1394N20, a potential probiotic strain, isolated from a Hanwoo calf
Young Joon Oh, Joon Yong Kim, Jieun Lee, Seul Ki Lim, Dohyeon Yu, Yeon-su Oh, Jinho Park, Hak-Jong Choi

https://doi.org/10.5187%2Fjast.2021.e100
Sequencing | PacBio RS II
2021-09-27 | Frontiers in Genetics
Organelle Genome Variation in the Red Algal Genus Ahnfeltia (Florideophyceae)
Hocheol Kim, Ji Hyun Yang, Danilo E. Bustamante, Martha S. Calderon, Andres Mansilla, Christine A. Maggs, Gayle I. Hansen, Hwan Su Yoon

https://doi.org/10.3389/fgene.2021.724734
Sequencing | Library prep, PacBio Sequel, Illumina NovaSeq6000
2021-09-21 | Antonie van Leeuwenhoek volume
Pontibacter pudoricolor sp. nov., and Pontibacter russatus sp. nov. radiation-resistant bacteria isolated from soil
Soohyun Maeng, Yuna Park, Sang Eun Lee, Joo Hyun Han, In-Tae Cha, Ki-Eun Lee, Byoung-Hee Lee, Myung Kyum Kim

https://doi.org/10.1007/s10482-020-01446-x
Sequencing | PacBio RS II
2021-09-21 | Research Square
Pontibacter rubellus sp. nov., and Pontibacter situs sp. nov. bacteria isolated from soil
Soohyun Maeng, Yuna Park, Tuvshinzaya Damdintogtokh, Hyejin Oh, Minji Bang, Sathiyaraj Srinivasan, Myungkyum Kim

https://doi.org/10.21203/rs.3.rs-582338/v1
Sequencing | PacBio RS II
2021-09-08 | mSphere
An Escherichia coli FdrA Variant Derived from Syntrophic Coculture with a Methanogen Increases Succinate Production Due to Changes in Allantoin Degradation
Nam Yeun Kim, Yeon Joo Lee, Ji Won Park, Su Nyung Kim, E Young Kim, Yuseob Kim, Ok Bin Kim

https://doi.org/10.1128/mSphere.00654-21
Sequencing | Library prep, PacBio, Illumina HiSeq2500, Illumina NovaSeq6000
2021-08-12 | New Disease Reports
First report of Fig badnavirus-1 associated with Fig mosaic virus in fig in Iraq
S. Zagier, O. Alisawi, F. Al Fadhal

https://doi.org/10.1002/ndr2.12030
Sequencing | Library prep, Illumina NovaSeq6000
2021-07-26 | Environmental Pollution
A hybrid DNA sequencing approach is needed to properly link genotype to phenotype in multi-drug resistant bacteria
Adeel Farooq, Jungman Kim, Shahbaz Raza, Jeonghwan Jang, Dukki Han, Michael J. Sadowsky, Tatsuya Unno

https://doi.org/10.1016/j.envpol.2021.117856
Sequencing | Illumina HiSeq2500, Oxford Nanopore Technologies MinION
2021-07-23 | Molecular Plant
Direct acetylation of a conserved threonine of RIN4 by the bacterial effector HopZ5 or AvrBsT activates RPM1-dependent immunity in Arabidopsis
Sera Choi, Maxim Prokchorchik, Hyeonjung Lee, Ravi Gupta, Yoonyoung Lee, EuiHwan Chung, Buhyeon Cho, Min-Sung Kim, Sun Tae Kim, Kee Hoon Sohn

https://doi.org/10.1016/j.molp.2021.07.017
Sequencing | Illumina NovaSeq6000
2021-07-15 | Cancer Research
Host-Dependent Phenotypic Resistance to EGFR Tyrosine Kinase Inhibitors
Yuya Haga, Ilaria Marrocco, Ashish Noronha, Mary Luz Uribe, Nishanth Belugali Nataraj, Arunachalam Sekar, Diana Drago-Garcia, Simone Borgoni , Moshit Lindzen, Suvendu Giri, Stefan Wiemann, Yasuo Tsutsumi, Yosef Yarden

https://doi.org/10.1158%2F0008-5472.CAN-20-3555
Sequencing
2021-07-09 | Animals
Genome of the Southern Giant Petrel Assembled Using Third-Generation DNA Sequencing and Linked Reads Reveals Evolutionary Traits of Southern Avian
Sun-Hee Kim, Seung-Jae Lee, Euna Jo, Jangyeon Kim, Jong-U Kim, Jeong-Hoon Kim, Hyun Park, Young-Min Chi

https://doi.org/10.3390/ani11072046
Sequencing | Library prep, PacBio Sequel, Illumina NovaSeq6000, 10x Chromium
2021-07-05 | Archives of Microbiology
Paenibacillus albifavus sp. nov., a?bacterium isolated from?soil
Joo Hyun Han, Sang Eun Lee, Sathiyaraj Srinivasan

https://doi.org/10.1007/s00203-021-02476-3
Sequencing | Library prep, Illumina
2021-06-25 | Research Square
An auxin-mediated ultradian rhythm promotes root regeneration in Arabidopsis
Q Vu, K Song, SJ Park, L Xu, HG Nam, S Hong

https://doi.org/10.21203/rs.3.rs-604908/v1
Sequencing | Library prep, Illumina NextSeq500
2021-06-25 | Current Microbiology
Salinimonas marina sp. nov. Isolated from?Jeju Island Marine Sediment
Minji Kim, Ki?Eun Lee, In?Tae Cha, Eui Tae Kim, Soo?Je Park

https://doi.org/10.1007/s00284-021-02576-9
Sequencing | PacBio RS II
2021-06-22 | The ISME Journal
Verrucomicrobial methanotrophs grow on diverse C3 compounds and use a homolog of particulate methane monooxygenase to oxidize acetone
Samuel Imisi Awala, Joo-Han Gwak, Yong-Man Kim, So-Jeong Kim, Andrea Strazzulli, Peter F. Dunfield, Hyeokjun Yoon, Geun-Joong Kim, Sung-Keun Rhee

https://doi.org/10.1038/s41396-021-01037-2
Sequencing | Illumina NovaSeq6000
2021-06-19 | International Journal of Molecular Sciences
Biosensor-Assisted Adaptive Laboratory Evolution for Violacein Production
Da-ae Gwon, Joo Yeon Seok, Gyoo Yeol Jung, Jeong Wook Lee

https://doi.org/10.3390/ijms22126594
Sequencing | Library prep, Illumina NextSeq500
2021-06-17 | Experimental Eye Research
The effect of sex on the mouse lens transcriptome
Adam P. Faranda, Mahbubul H. Shihan, Yan Wang, Melinda K. Duncan

https://doi.org/10.1016/j.exer.2021.108676
Sequencing | Illumina NovaSeq6000
2021-06-16 | Annals of Clinical Microbiology and Antimicrobials
Role of AmpG in the resistance to β-lactam agents, including cephalosporins and carbapenems: candidate for a novel antimicrobial target
Roshan D’Souza, Le Phuong Nguyen, Naina A. Pinto, Hyunsook Lee, Thao Nguyen Vu, Hoyoung Kim, Hyun Soo Cho, Dongeun Yong

https://doi.org/10.1186/s12941-021-00446-7
Sequencing | PacBio RS II
2021-06-10 | Genes & Development
Transient genomic instability drives tumorigenesis through accelerated clonal evolution
Ofer Shoshani, Bjorn Bakker, Lauren de Haan, Andrea E. Tijhuis, Yin Wang, Dong Hyun Kim, Marcus Maldonado, Matthew A. Demarest, Jon Artates, Ouyang Zhengyu, Adam Mark, Rene Wardenaar, Roman Sasik, Diana C.J. Spierings, Benjamin Vitre, Kathleen Fisch, Floris Foijer, Don W. Cleveland

https://doi.org/10.1101%2Fgad.348319.121
Sequencing | Illumina NextSeq500
2021-06-01 | Fish & Shellfish Immunology
The possible role of catalase in innate immunity and diminution of cellular oxidative stress: Insights into its molecular characteristics, antioxidant activity, DNA protection, and transcriptional regulation in response to immune stimuli in yellowtail clownfish (Amphiprion clarkii)
W.M. Gayashani Sandamalik, Hyukjae Kwon, Chaehyeon Lim, Hyerim Yang, Jehee Lee

https://doi.org/10.1016/j.fsi.2021.03.022
Sequencing | Illumina NovaSeq6000
2021-06-01 | Experimental Eye Research
The aging mouse lens transcriptome
Adam P. Faranda, Mahbubul H. Shihan, Yan Wang, Melinda K. Duncan

https://doi.org/10.1016/j.exer.2021.108663
Sequencing | Illumina NovaSeq6000
2021-05-12 | Science Translational Medicine
Avasopasem manganese synergizes with hypofractionated radiation to ablate tumors through the generation of hydrogen peroxide
Brock J Sishc, Lianghao Ding, Taek-Keun Nam, Collin D Heer, Samuel N Rodman, Joshua D Schoenfeld, Melissa A Fath, Debabrata Saha, Casey F Pulliam, Britta Langen, Robert A Beardsley, Dennis P Riley, Jeffery L Keene, Douglas R Spitz, Michael D Story

https://doi.org/10.1126/scitranslmed.abb3768
Sequencing | Library prep, Illumina NextSeq500
2021-05-07 | Archives of Microbiology
Parasphingorhabdus halotolerans sp. nov. isolated from marine sediment in Jeju Island
So?Jeong Kim, Minji Kim, Ki?Eun Lee, In?Tae Cha, Soo?Je Park

https://doi.org/10.1007/s00203-021-02366-8
Sequencing | PacBio RS II
2021-04-28 | Journal of Microbiology
Salicibibacter cibarius sp. nov. and Salicibibacter cibi sp. nov., two novel species of the family Bacillaceae isolated from kimchi
Young Joon Oh, Joon Yong Kim, Seul Ki Lim, Min-Sung Kwon, Hak-Jong Choi

https://doi.org/10.1007/s12275-021-0513-1
Sequencing | PacBio RS II
2021-04-24 | bioRxiv
Molecular diagnosis of new isolate of tomato yellow leaf curl virus in Iraq
Ali Alabde, Osamah Alisawi, Fadhal Al Fadhal

https://doi.org/10.1101/2021.04.02.438091
Sequencing | Illumina NovaSeq6000
2021-04-16 | Current Microbiology
Draconibacterium halophilum sp. nov., A Halophilic Bacterium Isolated from Marine Sediment
Minji Kim, Ki?Eun Lee, In?Tae Cha, Soo?Je Park

https://doi.org/10.1007/s00284-021-02496-8
Sequencing | PacBio RS II
2021-04-15 | Cell Death & Disease
FCN3?functions as a tumor suppressor of lung adenocarcinoma through induction of endoplasmic reticulum stress
Haeyeon Jang, Yukyung Jun, Suyeon Kim, Eunjeong Kim, Yeonjoo Jung, Byung Jo Park, Jinseon Lee, Jhingook Kim, Sanghyuk Lee, Jaesang Kim

https://doi.org/10.1038/s41419-021-03675-y
Sequencing, Bioinformatics | Library prep, Illumina NovaSeq6000
2021-04-15 | Frontiers in Microbiology
Comparative Genomics Supports That Brazilian Bioethanol Saccharomyces cerevisiae Comprise a Unified Group of Domesticated Strains Related to Cachaca Spirit Yeasts
Ana Paula Jacobus, Timothy G. Stephens, Pierre Youssef, Raul Gonzalez-Pech, Michael M. Ciccotosto-Camp, Katherine E. Dougan, Yibi Chen, Luiz Carlos Basso, Jeverson Frazzon, Cheong Xin Chan, Jeferson Gross

https://doi.org/10.3389/fmicb.2021.644089
Sequencing | PacBio RS II
2021-04-07 | BMC Genomics
Gene expression profiles underlying aggressive behavior in the prefrontal cortex of cattle
Paulina G. Eusebi, Natalia Sevane, Thomas O’Rourke, Manuel Pizarro, Cedric Boeckx, Susana Dunner

https://doi.org/10.1186/s12864-021-07505-5
Sequencing, Bioinformatics | Library prep, Illumina NovaSeq6000
2021-04-04 | Fish & Shellfish Immunology
The possible role of catalase in innate immunity and diminution of cellular oxidative stress: Insights into its molecular characteristics, antioxidant activity, DNA protection, and transcriptional regulation in response to immune stimuli in yellowtail clownfish (Amphiprion clarkii)
W.M. Gayashani Sandamalika, Hyukjae Kwon, Chaehyeon Lim, Hyerim Yang, Jehee Lee

https://doi.org/10.1016/j.fsi.2021.03.022
Sequencing | Illumina NovaSeq6000
2021-04-01 | Cell Death & Differentiation
RUNX3 methylation drives hypoxia-induced cell proliferation and antiapoptosis in early tumorigenesis
Sun Hee Lee, Do Young Hyeon, Soo-Hyun Yoon, Ji-Hak Jeong, Saeng-Myung Han, Ju-Won Jang, Minh Phuong Nguyen, Xin-Zi Chi, Sojin An, Kyung-gi Hyun, Hee-Jung Jung, Ji-Joon Song, Suk-Chul Bae, Woo-Ho Kim, Daehee Hwang, You Mie Lee

https://doi.org/10.1038/s41418-020-00647-1
Sequencing | Illumina HiSeq2500
2021-03-29 | European Journal of Human Genetics
Whole exome sequencing reveals putatively novel associations in retinopathies and drusen formation
Lance P. Doucette, Nicole C. L. Noel, Yi Zhai, Manlong Xu, Oana Caluseriu, Stephanie C. Hoang, Alina J. Radziwon, Ian M. MacDonald

https://doi.org/10.1038/s41431-021-00872-3
Sequencing | Illumina HiSeq2500
2021-03-21 | Microorganisms
In-Situ Metatranscriptomic Analyses Reveal the Metabolic Flexibility of the Thermophilic Anoxygenic Photosynthetic Bacterium Chloroflexus aggregans in a Hot Spring Cyanobacteria-Dominated Microbial Mat
Shigeru Kawai, Joval N. Martinez, Mads Lichtenberg, Erik Trampe, Michael Kuhl, Marcus Tank, Shin Haruta, Arisa Nishihara, Satoshi Hanada, Vera Thiel

https://doi.org/10.3390/microorganisms9030652
Sequencing | Library prep, Illumina NextSeq500
2021-03-18 | Microbiology Resource Announcements
Draft Genome Sequence of Plant Growth-Promoting Rhizobacterium?Burkholderia?sp. Strain USMB20, Isolated from Nodules of?Mucuna bracteata
Nurohaida Ab Aziza, Salwani Shaffiea, Ahmad Yamin Abdul Rahmana, Yam Hokchaib, Nazalan Najimudina, Amir Hamzah Ahmad Ghazali

https://doi.org/10.1128/MRA.01051-20
Sequencing | PacBio RS
2021-03-16 | Frontiers in Plant Science
High-Resolution Transcriptome Atlas and Improved Genome Assembly of Common Buckwheat, Fagopyrum esculentum
Aleksey A. Penin, Artem S. Kasianov, Anna V. Klepikova, Ilya V. Kirov, Evgeny S. Gerasimov, Aleksey N. Fesenko, Maria D. Logacheva

https://doi.org/10.3389/fpls.2021.612382
Sequencing | PacBio Sequel II
2021-03-11 | Microbiology Resource Announcements
Draft Genome Sequence of Streptomyces Strain SJ1-7, a Soil Bacterial Isolate
Won-Jae Chi, Da Som Kim, Soonok Kim, Eu Ddeum Choi, Sook-Young Park

https://doi.org/10.1128/MRA.01283-20
Sequencing | PacBio RS II
2021-03-04 | Microbiology Resource Announcements
Complete Genome Sequence of?Aureimonas?sp. Strain OT7, Isolated from Human Skin
Munkhtsatsral Ganzorig, Kyoung Lee

https://doi.org/10.1128/MRA.00024-21
Sequencing | PacBio RS II
2021-03-01 | Archives of Microbiology
Hymenobacter radiodurans sp. nov., isolated from soil in the Republic of Korea
Jun Hwee Jang, Soo Hyun Maeng, Hee Young Jung, Myung Kyum Kim, Gayathri Subramani

https://doi.org/10.1007/s00203-020-01895-y
Sequencing | PacBio RS II
2021-02-25 | Frontiers in Cardiovascular Medicine
EZH2 Dynamically Associates With Non-coding RNAs in Mouse Hearts After Acute Angiotensin II Treatment
Shun Wang, Ningning Guo, Shuangling Li, Yuan He, Di Zheng, Lili Li, Zhihua Wang

https://doi.org/10.3389/fcvm.2021.585691
Sequencing | Library prep, Illumina NextSeq500
2021-02-12 | bioRxiv
Extensive N4 Cytosine Methylation is Essential for Marchantia Sperm Function
James Walker, Jingyi Zhang, Yalin Liu, Martin Vickers, Liam Dolan, Keiji Nakajima, Xiaoqi Feng

https://doi.org/10.1101/2021.02.12.428880
Sequencing | PacBio Sequel II
2021-02-01 | Genome Biology and Evolution
Evolutionary History of Mitochondrial Genomes in Discoba, Including the Extreme Halophile Pleurostomum flabellatum (Heterolobosea)
Khaoula Ettahi, Duckhyun Lhee, Ji Yeon Sung, Alastair G B Simpson, Jong Soo Park, Hwan Su Yoon

https://doi.org/10.1093/gbe/evaa241
Sequencing | Library prep, Illumina NovaSeq6000
2021-02-01 | Molecular Biology and Evolution
Amoeba Genome Reveals Dominant Host Contribution to Plastid Endosymbiosis
Duckhyun Lhee, JunMo Lee, Khaoula Ettahi, Chung Hyun Cho, Ji-San Ha, Ya-Fan Chan, Udi Zelzion, Timothy G Stephens, Dana C Price, Arwa Gabr, Eva C M Nowack, Debashish Bhattacharya, Hwan Su Yoon

https://doi.org/10.1093/molbev/msaa206
Sequencing | Library prep, PacBio RS II, Illumina HiSeq2500
2021-01-19 | FEMS Microbiology Letters
Proof of the triple prerequisite conditions which are essential for carbapenem resistance development in Klebsiella pneumoniae by using radiation-mediated mutagenesis
Naina Adren Pinto, Roshan D'Souza, Le Phuong Nguyen, Thao Nguyen Vu, Dongeun Yong

https://doi.org/10.1093/femsle/fnaa189
Sequencing | PacBio RSII
2021-01-18 | Mitochondrial DNA Part B
Complete mitochondrial genome of Gloydius saxatilis (Viperidae: Crotalinae) from Korea
Yun Sun Lee, Min Seock Do , Hye Sook Jeon , Sang-Cheol Lee , Ji-Hwa Jung, Jae-Hwa Suh, Junghwa An

https://doi.org/10.1080/23802359.2021.1878957
Sequencing | Library prep, Illumina NovaSeq6000
2021-01-18 | Research Square
Gene Expression Proles Underlying Aggressive Behavior in the Prefrontal Cortex of Cattle
Paulina G. Eusebi, Natalia Sevane, Thomas O’Rourke, Manuel Pizarro, Cedric Boeckx, Susana Dunner

https://doi.org/10.21203/rs.3.rs-146648/v1
Sequencing, Bioinformatics | Library prep, Illumina NovaSeq6000
2021-01-15 | Antonie van Leeuwenhoek
Pseudocnuella soli gen. nov., sp. nov., a bacterium from soil belonging to the family Chitinophagaceae
Soohyun Maeng, Yuna Park, Ju Hyun Han, Sang Eun Lee, Myung Kyum Kim, Gayathri Subramani

https://doi.org/10.1007/s10482-020-01509-z
Sequencing | PacBio RSII
2021-01-13 | Frontiers in Genetics
Draft Genome of the Edible Oriental Insect Protaetia brevitarsis seulensis
Joon Ha Lee, Myunghee Jung, Younhee Shin, Sathiyamoorthy Subramaniyam, In-Woo Kim, Minchul Seo, Mi-Ae Kim, Seong Hyun Kim, Jihye Hwang, Eun Hwa Choi, Ui Wook Hwang, Jae Sam Hwang

https://doi.org/10.3389/fgene.2020.593994
Sequencing | PacBio Sequel, Illumina NextSeq500
2021-01-13 | Mitochondrial DNA Part B
The complete chloroplast genome of Campanula takesimana Nakai from Dokdo Island in Korea (Campanulaceae)
Jongsun Park, Yoonhyuk Bae, Bo-Yun Kim, Gi-Heum Nam, Jeong-Mi Park, Byoung Yoon Lee, Hwa-Jung Suh, Sang-Hun Oh

https://doi.org/10.1080/23802359.2020.1851157
Sequencing | Illumina NovaSeq6000
2021-01-11 | Frontiers in Genetics
The Draft Genome Sequence of a New Land-Hopper Platorchestia hallaensis
Ajit Kumar Patra, Oksung Chung, Ji Yong Yoo, Sang Ho Baek, Tae Won Jung, Min Seop Kim, Moon Geun Yoon, Youngik Yang, Jeong-Hyeon Choi

https://doi.org/10.3389/fgene.2020.621301
Sequencing | PacBio RSII
2021-01-10 | International Journal of Molecular Sciences
CXCR4 Regulates Temporal Differentiation via PRC1 Complex in Organogenesis of Epithelial Glands
Junchul Kim, Sang-Woo Lee, Kyungpyo Park

https://doi.org/10.3390/ijms22020619
Sequencing | Library prep, Illumina NovaSeq6000
2021-01-04 | Current Microbiology
Flaviaesturariibacter aridisoli sp. nov., A Bacterium Isolated from Dry Soil
Sang Eun Lee, Joo Hyun Han, Gayathri Sathiyaraj, Sathiyaraj Srinivasan

https://doi.org/10.1007/s00284-020-02312-9
Sequencing | Illumina
2021-01-04 | Cancer Letters
DIM-C-pPhtBu induces lysosomal dysfunction and unfolded protein response - mediated cell death via excessive mitophagy
Sung Un Kang, Dae Ho Kim, Yun Sang Lee, Mei Huang, Hyung Kwon Byeon, Seong-Ho Lee, Seung Joon Baek, Chul-Ho Kim

https://doi.org/10.1016/j.canlet.2021.01.005
Sequencing | Library prep, Illumina HiSeq2500
2021-01-01 | International Journal of Systematic and Evolutionary Microbiology
Kineobactrum salinum sp. nov., isolated from marine sediment
Minji Kim, In-Tae Cha, Ki-Eun Lee, Byoung-Hee Lee, Soo-Je Park

https://doi.org/10.1099/ijsem.0.004586
Sequencing | PacBio RSII
2020-12-31 | Korean Journal of Microbiology
Complete genome sequence of Janibacter indicus TT2, isolated from the human ear skin
Jargal Jambaldorj, Munkhtsatsral Ganzorig, Kyoung Lee

https://doi.org/10.7845/kjm.2020.0109
Sequencing | PacBio RS II
2020-12-31 | Korean Journal of Microbiology
Draft genome sequence of the polysaccharide degrading bacterium Cytophagaceae strain SJW1-29
Kiwoon Baek, Ahyoung Choi

https://doi.org/10.7845/kjm.2020.0112
Sequencing | PacBio RS II
2020-12-31 | Korean Journal of Microbiology
Complete genome sequence of a plant growth-promoting bacterium Pseudarthrobacter sp. NIBRBAC000502772, isolated from shooting range soil in the Republic of Korea
Min-Kyu Park, Yeong-Jun Park, Min-Chul Kim, Gi-Ung Kang, MinJi Kim, YoungJae Jo, Hyuk-Joon Kwon, Myung-Suk Kang, Min-Ha Kim, Soo-Young Kim, Jae-Ho Shin

https://doi.org/10.7845/kjm.2020.0066
Sequencing | PacBio RS II
2020-12-23 | PLOS Biology
LSM12-EPAC1 defines a neuroprotective pathway that sustains the nucleocytoplasmic RAN gradient
Jongbo Lee, Jumin Park, Ji-hyung Kim, Giwook Lee, Tae-Eun Park, Ki-Jun Yoon,Yoon Ki Kim, Chunghun Lim

https://doi.org/10.1371/journal.pbio.3001002
Sequencing | Illumina NovaSeq6000
2020-12-16 | Nature
Creation of bladder assembloids mimicking tissue regeneration and cancer
Eunjee Kim, Seoyoung Choi, Byunghee Kang, JungHo Kong, Yubin Kim, Woong Hee Yoon, Hwa-Rim Lee, SungEun Kim, Hyo-Min Kim, HyeSun Lee, Chorong Yang, You Jeong Lee, Minyong Kang, Tae-Young Roh, Sungjune Jung, Sanguk Kim, Ja Hyeon Ku, Kunyoo Shin

https://doi.org/10.1038/s41586-020-3034-x
Sequencing | Illumina HiSeq2500
2020-12-01 | Journal of Industrial Microbiology and Biotechnology
Effects of a Δ-9-fatty acid desaturase and a cyclopropane-fatty acid synthase from the novel psychrophile Pseudomonas sp. B14-6 on bacterial membrane properties
Tae-Rim Choi, Ye-Lim Park, Hun-Suk Song, Sun Mi Lee, Sol Lee Park, Hye Soo Lee, Hyun-Joong Kim, Shashi Kant Bhatia, Ranjit Gurav, Yoo Kyung Lee, Changmin Sung, Yung-Hun Yang

https://doi.org/10.1007/s10295-020-02333-0
Sequencing | PacBio
2020-11-18 | Nature Communications
Genome-enabled discovery of anthraquinone biosynthesis in Senna tora
Sang-Ho Kang, Ramesh Prasad Pandey, Chang-Muk Lee, Joon-Soo Sim, Jin-Tae Jeong, Beom-Soon Choi, Myunghee Jung, Daniel Ginzburg, Kangmei Zhao, So Youn Won, Tae-Jin Oh, Yeisoo Yu, Nam-Hoon Kim, Ok Ran Lee, Tae-Ho Lee, Puspalata Bashyal, Tae-Su Kim, Woo-Haeng Lee, Charles Hawkins, Chang-Kug Kim, Jung Sun Kim, Byoung Ohg Ahn, Seung Yon Rhee, Jae Kyung Sohng

https://doi.org/10.1038/s41467-020-19681-1
Sequencing | PacBio RS II, Sequel
2020-11-12 | Science
A ubiquitin ligase mediates target-directed microRNA decay independently of tailing and trimming
JAEIL HAN, COLLETTE A. LAVIGNE, BENJAMIN T. JONES, HE ZHANG, FRANK GILLETT, JOSHUA T. MENDELL

https://doi.org/10.1126/science.abc9546
Sequencing | Library prep, Illumina NextSeq500
2020-11-10 | Stem Cell Reports
Leptin Receptor Signaling Regulates Protein Synthesis Pathways and Neuronal Differentiation in Pluripotent Stem Cells
Manoj K. Gupta, Heidrun Vethe, Samir Softic, Tata Nageswara Rao, Vilas Wagh, Jun Shirakawa, Harald Barsnes, Marc Vaudel, Tomozumi Takatani, Sevim Kahraman, Masaji Sakaguchi, Rachael Martinez, Jiang Hu, Yngvild Bjørlykke, Helge Raeder, Rohit N. Kulkarni

https://doi.org/10.1016/j.stemcr.2020.10.001
Sequencing
2020-11-01 | Genomics
Molecular evolutionary and 3D protein structural analyses of Lactobacillus fermentum elongation factor Tu, a novel brain health promoting factor
Jia Sin Ong, Yen-Wenn Liu, Min-Tze Liong, Sy Bing Choi, Ying-Chieh Tsai, Wai Yee Low

https://doi.org/10.1016/j.ygeno.2020.06.052
Sequencing | PacBio RS II, Illumina HiSeq2000
2020-10-30 | Frontiers in Microbiology
Quorum Sensing System Affects the Plant Growth Promotion Traits of Serratia fonticola GS2
Byung Kwon Jung, Jerald Conrad Ibal, Huy Quang Pham, Min-Chul Kim, Gun-Seok Park, Sung-Jun Hong, Hyung Woo Jo, Chang Eon Park, Seung-Dae Choi, Yeongyun Jung, Setu Bazie Tagele, Jae-Ho Shin

https://doi.org/10.3389/fmicb.2020.536865
Sequencing
2020-10-29 | Microbiology Resource Announcements
Genome Sequence of Clinical Strain Pseudomonas aeruginosa NRD619
Laura Sisk-Hackworth, Andrew Sue, Saima Aslam, Dwayne Roach

https://doi.org/10.1128/MRA.01013-20
Sequencing | PacBio RS II
2020-10-26 | Nucleic Acids Research
Directed co-evolution of interacting protein?peptide pairs by compartmentalized two-hybrid replication (C2HR)
Jia Wei Siau, Samuel Nonis, Sharon Chee, Li Quan Koh, Fernando J Ferrer, Christopher J Brown, Farid J Ghadessy

https://doi.org/10.1093/nar/gkaa933
Sequencing | Illumina NextSeq500
2020-10-15 | Scientific Reports
Evaluation of the RAS signaling network in response to MEK inhibition using organoids derived from a familial adenomatous polyposis patient
Hiroki Osumi, Atsushi Muroi, Mizuho Sakahara, Hiroshi Kawachi, Takuya Okamoto, Yasuko Natsume, Hitomi Yamanaka, Hiroshi Takano, Daisuke Kusama, Eiji Shinozaki, Akira Ooki, Kensei Yamaguchi, Masashi Ueno, Kengo Takeuchi, Tetsuo Noda, Satoshi Nagayama, Naohiko Koshikawa, Ryoji Yao

https://doi.org/10.1038/s41598-020-74530-x
Sequencing | Illumina HiSeq2500, NovaSeq6000
2020-10-13 | International Journal of Systematic and Evolutionary Microbiology
Sphingomonas changnyeongensis sp. nov. isolated from the Hapcheon?Changnyeong barrage area in the Nakdong river
Chulwoo Park?, Minkyung Kim?, Byoung-Hee Lee?, Ki-Eun Lee?, Woojun Park

https://doi.org/10.1099/ijsem.0.004503
Sequencing, Bioinformatics | PacBio
2020-10-12 | Cancers
Comprehensive Exome Analysis of Immunocompetent Metastatic Head and Neck Cancer Models Reveals Patient Relevant Landscapes
Hui Li, Hoi-Lam Ngan, Yuchen Liu, Helen Hoi Yin Chan, Peony Hiu Yan Poon, Chun Kit Yeung, Yibing Peng, Wai Yip Lam, Benjamin Xiaoyi Li, Yukai He, Vivian Wai Yan Lui

https://doi.org/10.3390/cancers12102935
Sequencing | Illumina NovaSeq6000
2020-10-10 | Journal of Biotechnology
Effects of osmolytes on salt resistance of Halomonas socia CKY01 and identification of osmolytes-related genes by genome sequencing
Ye-Lim Park, Tae-Rim Choi, Yeong-Hoon Han, Hun-Suk Song, Jun-Young Park, Shashi Kant Bhatia, Ranjit Gurav, Kwon-Young Choi, Yun-Gon Kim, Yung-Hun Yang

https://doi.org/10.1016/j.jbiotec.2020.07.006
Sequencing | PacBio
2020-10-08 | Microbiology Resource Announcements
Complete Genome Sequence of the Novel Psychrobacter sp. Strain AJ006, Which Has the Potential for Biomineralization
Jun Ho Lee, Pyung Cheon Lee

https://doi.org/10.1128/MRA.00986-20
Sequencing | PacBio RS II, Illumina HiSeq2000
2020-10-08 | Microbiology Resource Announcements
Complete Genome Sequence of Yellow Pigment-Producing Sphingobium sp. Strain HAL-16
Soon Jae Kwon, Pyung Cheon Lee

https://doi.org/10.1128/MRA.00985-20
Sequencing | PacBio RS II, Illumina HiSeq2000
2020-09-25 | BMC Nephrology
RNA-Seq identifies condition-specific biological signatures of ischemia-reperfusion injury in the human kidney
Meeyoung Park, Chae Hwa Kwon, Hong Koo Ha, Miyeun Han, Sang Heon Song

https://doi.org/10.1186/s12882-020-02025-y
Sequencing | Illumina HiSeq2500
2020-09-14 | Scientific Reports
Integrative genomic analysis of salivary duct carcinoma
Youngwook Kim, Sanghoon Song, Miran Lee, Teresa Swatloski, Joon Ho Kang, Young-Hyeh Ko, Woong-Yang Park, Han-Sin Jeong, Keunchil Park

https://doi.org/10.1038/s41598-020-72096-2
Sequencing | Illumina
2020-09-10 | Microbiology Resource Announcements
Complete Genome Sequence of the Carotenoid-Producing Strain Gordonia ajoucoccus A2
Soon Jae Kwon, Yong Jin Choi, Ju Min Kim, Pyung Cheon Lee

https://doi.org/10.1128/MRA.00662-20
Sequencing | PacBio RS II, Illumina HiSeq2000
2020-09-07 | BMC Evolutionary Biology
Potential causes and consequences of rapid mitochondrial genome evolution in thermoacidophilic Galdieria (Rhodophyta)
Chung Hyun Cho, Seung In Park, Claudia Ciniglia, Eun Chan Yang, Louis Graf, Debashish Bhattacharya, Hwan Su Yoon

https://doi.org/10.1186/s12862-020-01677-6
Sequencing | Illumina HiSeq2500
2020-08-26 | Biotechnology for Biofuels
Zmo0994, a novel LEA-like protein from Zymomonas mobilis, increases multi-abiotic stress tolerance in Escherichia coli
Jungwoo Yang, Ha Eun Kim, Young Hoon Jung, Jungyeon Kim, Do Hyoung Kim, Adrian R. Walmsley, Kyoung Heon Kim

https://doi.org/10.1186/s13068-020-01790-0
Sequencing | Illumina HiSeq2500
2020-08-11 | Cell Reports
Runx2+ Niche Cells Maintain Incisor Mesenchymal Tissue Homeostasis through IGF Signaling
Shuo Chen, Junjun Jing, Yuan Yuan, Jifan Feng, Xia Han, Quan Wen, Thach-Vu Ho, Chelsea Lee, Yang Chai

https://doi.org/10.1016/j.celrep.2020.108007
Sequencing | Library prep, Illumina NextSeq500
2020-08-06 | Journal of Translational Medicine
PDX models of human lung squamous cell carcinoma: consideration of factors in preclinical and co-clinical applications
Hae-Yun Jung, Tae Ho Kim, Jong-Eun Lee, Hong Kwan Kim, Jong Ho Cho, Yong Soo Choi, Sumin Shin, Se-Hoon Lee, Hwanseok Rhee, Hee Kyung Lee, Hyun Jung Choi, Hye Yoon Jang, Seungjae Lee, Jung Hee Kang, Young Ae Choi, Sanghyuk Lee, Jinseon Lee, Yoon La Choi, Jhingook Kim

https://doi.org/10.1186/s12967-020-02473-y
Sequencing | Library prep, Illumina HiSeq2000
2020-08-01 | Matrix Biology
Fibronectin has multifunctional roles in posterior capsular opacification (PCO)
Mahbubul H. Shihan, Mallika Kanwar, Yan Wang Erin E. Jackson, Adam P. Faranda, Melinda K. Duncan

https://doi.org/10.1016/j.matbio.2020.02.004
Sequencing | Illumina NextSeq500
2020-08-01 | Data in Brief
Genome data of shrimp acute hepatopancreatic necrosis disease causative Vibrio parahaemolyticus strains isolated from South Korea aquaculture farms
Seong DonHwang, Jee Youn Hwang, Saebom Sohn, Su Mi Kim, Seok Ryel Kim, Kwang Il Kim, Mun-Gyeong Kwon, Myung hee Jung, Kyoo-yeol Lee, Byeong-chul Kang, Jung Soo Seo

https://doi.org/10.1016/j.dib.2020.105697
Sequencing | PacBio Sequel
2020-07-27 | Archives of Microbiology
Flaviaesturariibacter flavus sp. nov., isolated from soil in Jeju Island
Jun Hwee Jang, Soo Hyun Maeng, Hee Young Jung, Myung Kyum Kim, Gayathri Subramani

https://doi.org/10.1007/s00203-020-01963-3
Sequencing | Illumina
2020-07-22 | BMC Medical Genetics
Gene expression profiling of fibroblasts in a family with LMNA-related cardiomyopathy reveals molecular pathways implicated in disease pathogenesis
Halida P. Widyastuti, Trina M. Norden-Krichmar, Anna Grosberg, Michael V. Zaragoza

https://doi.org/10.1186/s12881-020-01088-w
Sequencing | Library prep, Illumina NextSeq500
2020-07-17 | Microorganisms
In vitro Edwardsiella piscicida CK108 Transcriptome Profiles with Subinhibitory Concentrations of Phenol and Formalin Reveal New Insights into Bacterial Pathogenesis Mechanisms
Ju Bin Yoon, Sungmin Hwang, Se-Won Baek, Seungki Lee, Woo Young Bang, Ki Hwan Moon

https://doi.org/10.3390/microorganisms8071068
Sequencing | Illumina NovaSeq6000
2020-07-15 | Mitochondrial DNA Part B
The complete chloroplast genome sequence of economical standard tea plant, Camellia sinensis L. cultivar Sangmok, in Korea
Dong-jun Lee, Chang-Kug Kim, Tae-Ho Lee, So-Jin Lee, Doo-Gyung Moon, Yong-Hee Kwon, Jeong-Yong Cho

https://doi.org/10.1080/23802359.2020.1790311
Sequencing | Library prep, PacBio Sequel II
2020-07-15 | Fuel
Microbial enhanced oil recovery potential of surfactin-producing Bacillus subtilis AB2.0
Vanessa Marques Alvarez, Carolina Reis Guimaraes, Diogo Jurelevicius, Livia Vieira Araujo de Castilho, Joab Sampaio de Sousa, Fabio Faria da Mota, Denise Maria Guimaraes Freire, Lucy Seldina

https://doi.org/10.1016/j.fuel.2020.117730
Sequencing | PacBio RS II
2020-07-07 | Plant Molecular Biology
Transcriptome analysis of Eucalyptus grandis genotypes reveals constitutive overexpression of genes related to rust (Austropuccinia psidii) resistance
Samuel A. Santos, Pedro M. P. Vidigal, Lucio M. S. Guimaraes, Reginaldo G. Mafia, Matthew D. Templeton, Acelino C. Alfenas

https://doi.org/10.1007/s11103-020-01030-x
Sequencing | Library prep, Illumina NovaSeq6000
2020-06-27 | Archives of Microbiology
Sphingomonas parva sp. nov., isolated from soil in Jeju Island
Soohyun Maeng, Yuna Park, Ju Hyun Han, Sung Eun Lee, Chang-woo Ha, Myung Kyum Kim, Gayathri Subramani

https://doi.org/10.1007/s00203-020-01925-9
Sequencing | Illumina
2020-06-25 | Biochemical and Biophysical Research Communications
Disruption of the polyubiquitin gene Ubb reduces the self-renewal capacity of neural stem cells
Chul-Woo Park, Byung-Kwon Jung, Kwon-Yul Ryu

https://doi.org/10.1016/j.bbrc.2020.04.042
Sequencing | Illumina HiSeq2500
2020-05-29 | International Journal of Molecular Sciences
Transcriptome Analysis of Maternal Gene Transcripts in Unfertilized Eggs of Misgurnus anguillicaudatus and Identification of Immune-Related Maternal Genes
Chan-Hee Kim, Eun Jeong Kim, Chaehwa Seo, Yoon Kwon Nam

https://doi.org/10.3390/ijms21113872
Sequencing | Illumina HiSeq2500
2020-05-18 | Frontiers in Plant Science
Genome Assembly and Annotation of Soft-Shelled Adlay (Coix lacryma-jobi Variety ma-yuen), a Cereal and Medicinal Crop in the Poaceae Family
Sang-Ho Kang, Byeollee Kim, Beom-Soon Choi, Hyun Oh Lee, Nam-Hoon Kim, Seung Jae Lee, Hye Sik Kim, Myung Ju Shin, Hyo-Won Kim, Kyunghyun Nam, Kyoung Dae Kang, Soo-Jin Kwon, Tae-Jin Oh, Sang-Choon Lee, Chang-Kug Kim

https://doi.org/10.3389/fpls.2020.00630
Sequencing | PacBio RS II, Illumina HiSeq2500
2020-05-12 | Plants
Mitochondrial Genome of Fagopyrum esculentum and the Genetic Diversity of Extranuclear Genomes in Buckwheat
Maria D. Logacheva, Mikhail I. Schelkunov, Aleksey N. Fesenko, Artem S. Kasianov, Aleksey A. Penin

https://doi.org/10.3390/plants9050618
Sequencing | PacBio Sequel II
2020-04-24 | International Journal of Systematic and Evolutionary Microbiology
Jeotgalibaca ciconiae sp. nov., isolated from the faeces of an Oriental stork
So-Yeon Lee?, Woorim Kang?, Pil Soo Kim?, Hyun Sik Kim?, Hojun Sung?, Na-Ri Shin?, Ji-Hyun Yun?, Jae-Yun Lee?, June-Young Lee?, Mi-Ja Jung?, Yun-Seok Jeong?, Euon Jung Tak?, Jeong Eun Han?, Dong-Wook Hyun?, Myung-Suk Kang?, Ki-Eun Lee?, Byoung-Hee Lee?, Jin-Woo Bae

https://doi.org/10.1099/ijsem.0.004163
Sequencing | PacBio RS II
2020-04-08 | Plants
Assembly and Analysis of the Complete Mitochondrial Genome of Capsella bursa-pastoris
Denis O. Omelchenko, Maxim S. Makarenko, Artem S. Kasianov, Mikhail I. Schelkunov, Maria D. Logacheva, Aleksey A. Penin

https://doi.org/10.3390/plants9040469
Sequencing | PacBio RS II
2020-04-01 | Molecular Plant-Microbe Interactions
High-Quality Genome Assembly of Peronospora destructor, the Causal Agent of Onion Downy Mildew
Karthi Natesan, Ji Yeon Park, Cheol-Woo Kim, Dong Suk Park, Young-Seok Kwon, Chang-Gi Back, Heejung Cho

https://doi.org/10.1094/MPMI-10-19-0280-A
Sequencing | PacBio Sequel
2020-03-31 | Korean Journal of Microbiology
Complete genome sequence of a ginsenoside-converting bacterium, Pseudobacter ginsenosidimutans Gsoil 221T, isolated from the soil of a ginseng field
Qing Mei Liu, Byoung Hee Lee, Ki-Eun Lee, Sang Yong Kim, Ji-Hyang Wee, Wan-Taek Im

https://doi.org/10.7845/kjm.2020.9127
Sequencing | PacBio RS II
2020-03-31 | Korean Journal of Microbiology
Complete genome sequence of Novosphingobium ginsenosidimutans FW-6T, a ginsenoside-converting bacterium, isolated from fresh water
Qing Mei Liu, Byoung Hee Lee, Ki-Eun Lee, Sang Yong Kim, Ji-Hyang Wee, Wan-Taek Im

https://doi.org/10.7845/kjm.2020.9126
Sequencing | PacBio RS II
2020-03-31 | Korean Journal of Microbiology
Complete genome sequence of Mucilaginibacter ginsenosidivorans Gsoil 3017T, a ginsenoside-converting bacterium, isolated from soil of a ginseng field
Young Woo Lee, Byoung Hee Lee, Ki-Eun Lee, Soon Youl Lee, Wan-Taek Im

https://doi.org/10.7845/kjm.2020.9128
Sequencing | PacBio RS II
2020-03-31 | Korean Journal of Microbiology
Complete genome sequence of Mucilaginibacter ginsenosidivorax KHI-28T, a ginsenoside-converting bacterium, isolated from sediment
Young Woo Lee, Byoung Hee Lee, Ki-Eun Lee, Soon Youl Lee, Wan-Taek Im

https://doi.org/10.7845/kjm.2020.9129
Sequencing | PacBio RS II
2020-03-27 | Biomolecules
Octominin Inhibits LPS-Induced Chemokine and Pro-inflammatory Cytokine Secretion from RAW 264.7 Macrophages via Blocking TLRs/NF-κB Signal Transduction
K. K. Asanka Sanjeewa, D. P. Nagahawatta, Hye-Won Yang, Jae Young Oh, Thilina U. Jayawardena, You-Jin Jeon, Mahanama De Zoysa, Ilson Whang, Bomi Ryu

https://doi.org/10.3390/biom10040511
Sequencing | PacBio RS II
2020-03-23 | Mitochondrial DNA Part B
Complete mitogenomes of two orb-weaver spiders, Argiope bruennichi and Araneus ventricosus
Jung A. Kim, Hye Sook Jeon, Tae Hwa Kang, Jung Sun Yoo, Jumin Jun

https://doi.org/10.1080/23802359.2020.1741463
Sequencing | Illumina HiSeq2500
2020-03-18 | Mitochondrial DNA Part B
Complete mitogenomes of two non-orb-weaving spiders, Pardosa astrigera and Agelena labyrinthica
Jung A. Kim, Hye Sook Jeon, Tae Hwa Kang, Jung Sun Yoo, Jumin Jun

https://doi.org/10.1080/23802359.2020.1741462
Sequencing | Illumina HiSeq2500
2020-03-12 | Microbiology Resource Announcements
Complete Genome Sequence of Gordonia sp. Strain JH63, Isolated from Human Skin
Kyoung Lee, Sachin Kumar Badaya, Rajni Singh, Jae Yun Lim

https://doi.org/10.1128/MRA.00059-20
Sequencing | PacBio RS II
2020-03-11 | bioRxiv
The superoxide dismutase mimetic GC4419 enhances tumor killing when combined with stereotactic ablative radiation
Brock J. Sishc, Lianghao Ding, Collin Heer, Debabrata Saha, Douglas R. Spitz, Michael D. Story

https://doi.org/10.1101/2020.03.10.984443
Sequencing | Illumina NextSeq500
2020-03-09 | Scientific Data
First draft genome for the sand-hopper Trinorchestia longiramus
Ajit Kumar Patra, Oksung Chung, Ji Yong Yoo, Min Seop Kim, Moon Geun Yoon, Jeong-Hyeon Choi, Youngik Yang

https://doi.org/10.1038/s41597-020-0424-8
Sequencing | PacBio RS II
2020-03-03 | Cell Death & Differentiation
Deleting key autophagy elongation proteins induces acquirement of tumor-associated phenotypes via ISG15
EunBin Kong, Hag Dong Kim, Joon Kim

https://doi.org/10.1038/s41418-020-0519-y
Sequencing | Illumina NextSeq500
2020-03-03 | Nucleic Acids Research
Atm deficiency in the DNA polymerase β null cerebellum results in cerebellar ataxia and Itpr1 reduction associated with alteration of cytosine methylation
Jusik Kim, Keeeun Kim, Jung-soon Mo, Youngsoo Lee

https://doi.org/10.1093/nar/gkaa140
Sequencing
2020-03-01 | Plant Physiology and Biochemistry
Bacillus subtilis strain GOT9 confers enhanced tolerance to drought and salt stresses in Arabidopsis thaliana and Brassica campestris
Og-Geum Woo, Hani Kim, Jong-Shik Kim, Hye Lim Keum, Kyu-Chan Lee, Woo Jun Sul, Jae-Hoon Lee

https://doi.org/10.1016/j.plaphy.2020.01.032
Sequencing | PacBio RS II, Illumina NovaSeq6000
2020-02-24 | Molecular Vision
Copy number variations and multiallelic variants in Korean patients with Leber congenital amaurosis
Dongheon Surl, Saeam Shin, Seung-Tae Lee, Jong Rak Choi, Junwon Lee, Suk Ho Byeon, Sueng-Han Han, Hyun Taek Lim, Jinu Han

http://www.molvis.org/molvis/v26/26
Sequencing | Illumina NovaSeq6000
2020-01-01 | Redox Biology
Glutathione peroxidase-1 regulates adhesion and metastasis of triple-negative breast cancer cells via FAK signaling
Eunkyung Lee, Ahyoung Choi, Yukyung Jun, Namhee Kim, Jong In Yook, Soo Youl Kim, Sanghyuk Lee, Sang Won Kang

https://doi.org/10.1016/j.redox.2019.101391
Sequencing | Illumina HiSeq2500
2019-12-31 | Korean Journal of Microbiology
Complete genome sequence of Flavisolibacter ginsenosidimutans Gsoil 636T, a ginsenoside-converting bacterium, isolated from soil used for cultivating ginseng
Dong-Ho Keum, Byoung Hee Lee, Ki-Eun Lee, Soon Youl Lee, Wan-Taek Im

https://doi.org/10.7845/kjm.2019.9131
Sequencing | PacBio RS II
2019-12-31 | Korean Journal of Microbiology
Complete genome sequence of Panacibacter ginsenosidivorans Gsoil 1550T, a ginsenoside-converting bacterium, isolated from soil of a ginseng field
Dong-Ho Keum, Byoung Hee Lee, Ki-Eun Lee, Soon Youl Lee, Wan-Taek Im

https://doi.org/10.7845/kjm.2019.9134
Sequencing | PacBio RS II
2019-12-31 | Korean Journal of Microbiology
Complete genome sequence of Arachidicoccus ginsenosidivorans Gsoil 809T, a ginsenoside-converting bacterium, isolated from ginseng cultivating soil
Ji Eun Lee, Byoung Hee Lee, Ki-Eun Lee, Myung-Suk Kang, Wan-Taek Im

https://doi.org/10.7845/kjm.2019.9133
Sequencing | PacBio RS II
2019-12-31 | Korean Journal of Microbiology
Complete genome sequence of Anseongella ginsenosidimutans Gsoil 524T , a ginsenoside-converting bacterium, isolated from soil cultivating ginseng
Ji Eun Lee, Byoung Hee Lee, Ki-Eun Lee, Myung-Suk Kang, Wan-Taek Im

https://doi.org/10.7845/kjm.2019.9132
Sequencing | PacBio RS II
2019-12-31 | Korean Journal of Microbiology
Complete genome sequence of Thermaerobacter sp. FW80, an aerobic extremely thermophilic bacterium isolated from a food waste compost
Ji-Hyun Nam, Tae-U Kim, Dong-Hun Lee

https://doi.org/10.7845/kjm.2019.9148
Sequencing | PacBio RS II
2019-12-31 | Korean Journal of Microbiology
Complete genome sequence of Pseudarthrobacter sp. NIBRBAC000502771 isolated from shooting range soil in Republic of Korea
Min-Kyu Park, Yeong-Jun Park, Min-Chul Kim, Gi-Ung Kang, MinJi Kim, YoungJae Jo, Hyuk-Joon Kwon, Myung-Suk Kang, Min-Ha Kim, Soo-Young, Kim Jae-Ho Shin

https://doi.org/10.7845/kjm.2019.9094
Sequencing | PacBio RS II
2019-12-30 | Molecular Ecology Resources
Chromosomal-level assembly of Takifugu obscurus (Abe, 1949) genome using third-generation DNA sequencing and Hi-C analysis
Seunghyun Kang, Jin-Hyoung Kim, Euna Jo, Seung Jae Lee, Jihye Jung, Bo-Mi Kim, Jun Hyuck Lee, Tae-Jin Oh, Seungshic Yum, Jae-Sung Rhee, Hyun Park

https://doi.org/10.1111/1755-0998.13132
Sequencing | Library prep, PacBio Sequel
2019-12-23 | Genes
Expression of Heat Shock Proteins in Thermally Challenged Pacific Abalone Haliotis discus hannai
Dongsoo Kyeong, Juyeon Kim, Younhee Shin, Sathiyamoorthy Subramaniyam, Byeong-Chul Kang, Eun-Ha Shin, Eun Hee Park, Eun Soo Noh, Young-Ok Kim, Jung Youn Park, Bo-Hye Nam

https://doi.org/10.3390/genes11010022
Sequencing | Library prep, Illumina HiSeq2000
2019-12-13 | International Journal of Systematic and Evolutionary Microbiology
Algoriphagus aquimaris sp. nov., isolated from seashore sand
Jinsoo Kim, Sung-Ho Yoon?, Keun-Hyeok Yang?, Sungchul Kim?, Sang-Seob Lee

https://doi.org/10.1099/ijsem.0.003793
Sequencing | Illumina NovaSeq6000
2019-12-12 | Cancers
Somatic Mutation of PIK3CA (H1047R) Is a Common Driver Mutation Hotspot in Canine Mammary Tumors as Well as Human Breast Cancers
Kang-Hoon Lee, Hyeon-Ji Hwang, Hyun Ji Noh, Tae-Jin, Shin Je-Yoel Cho

https://doi.org/10.3390/cancers11122006
Sequencing | Library prep, Illumina HiSeq2500
2019-12-10 | Antonie van Leeuwenhoek
Hymenobacter jejuensis sp. nov., a UV radiation-tolerant bacterium isolated from Jeju Island
Soohyun Maeng, Myung Kyum Kim, Gayathri Subramani

https://doi.org/10.1007/s10482-019-01363-8
Sequencing | PacBio RS II
2019-12-09 | Mitochondrial DNA Part B
Complete mitochondrial genome of Aethia cristatella (Charadriiformes: Alcidae)
Jung A Kim, Seung-Gu Kang, Jin Won Yang, Wee-Haeng Hur, Hyun-Jong Kil

https://doi.org/10.1080/23802359.2019.1693285
Sequencing | Illumina HiSeq2500
2019-12-03 | Archives of Microbiology
Methylobacterium segetis sp. nov., a novel member of the family Methylobacteriaceae isolated from soil on Jeju Island
Leonid N. Ten, Weilan Li, Nabil Salah Elderiny, Myung Kyum Kim, Seung-Yeol Lee, Alejandro P. Rooney, Hee-Young Jung

https://doi.org/10.1007/s00203-019-01784-z
Sequencing | Illumina NovaSeq6000
2019-11-27 | Archives of Microbiology
Lysobacter terrigena sp. nov., isolated from a Korean soil sample
Weilan Li, Nabil Salah Elderiny, Leonid N. Ten, Seung-Yeol Lee, Myung Kyum Kim, Hee-Young Jung

https://doi.org/10.1007/s00203-019-01776-z
Sequencing | Illumina NovaSeq6000
2019-11-20 | Mitochondrial DNA Part B
Mitochondrial genome of the Podosphaera xanthii: a plant pathogen causes powdery mildew in cucurbits
Seunghwan Kim, Myunghee Jung, Eun A. Oh, Tae Ho Kim, Jeong-Gu Kim

https://doi.org/10.1080/23802359.2019.1618209
Sequencing | PacBio
2019-11-14 | Current Microbiology
Lysobacter segetis sp. nov., Isolated from Soil
Leonid N. Ten, Jongguen Jeon, Nabil Salah Elderiny, Myung Kyum Kim, Seung-Yeol Lee, Hee-Young Jung

https://doi.org/10.1007/s00284-019-01801-w
Sequencing | Illumina NovaSeq6000
2019-11-08 | Mitochondrial DNA Part B
The complete chloroplast genome of Castanea crenata Sieb. & Zucc
Min-Jeong Kang, Tae-Dong Kim, Sang-A Lee, Hyo-Ryeon Lee, Chulwoo Kim, Hyoshin Lee, Eung-Jun Park

https://doi.org/10.1080/23802359.2019.1687038
Sequencing | PacBio Sequel
2019-11-07 | Microbiology Resource Announcements
Draft Genome Sequence of the Aquatic Fungus Margaritispora aquatica Strain NNIBRFG339
Jaeduk Goh, Hye Yeon Mun, Young-Hwan Park, Sangkyu Park, Yoosun Oh, Namil Chung

https://doi.org/10.1128/MRA.00866-19
Sequencing | PacBio RS II, Illumina NovaSeq6000
2019-11-01 | International Journal of Systematic and Evolutionary Microbiology
Emticicia agri sp. nov., a novel member of the family Cytophagaceae
Leonid N. Ten, Weilan Li, Aeri Ha?, Myung Kyum Kim?, Alejandro P. Rooney?, Hee-Young Jung

https://doi.org/10.1099/ijsem.0.003651
Sequencing | Library prep, Illumina NovaSeq6000
2019-11-01 | Horticultural Plant Journal
Transcriptomic Analysis of Differentially Expressed Genes and Alternative Splicing Events Associated with Crassulacean Acid Metabolism in Orchids
Ying Zhang, Wei Dong, Xinghua Zhao, Aixia Song, Kangwei Guo, Zhongjian Liu, Liangsheng Zhang

https://doi.org/10.1016/j.hpj.2019.12.001
Sequencing | Library prep, PacBio Sequel
2019-10-21 | Antonie van Leeuwenhoek volume
Nocardioides jejuensis sp. nov., isolated from soil
Jun Hwee Jang, Soohyun Maeng, Hee-Young Jung, Myung Kyum Kim, Gayathri Subramani

https://doi.org/10.1007/s10482-019-01343-y
Sequencing | Illumina
2019-10-07 | bioRxiv
Paulinella micropora KR01 holobiont genome assembly for studying primary plastid evolution
Duckhyun Lhee, JunMo Lee, Chung Hyun Cho, Ji-San Ha, Sang Eun Jeong, Che Ok Jeon, Udi Zelzion, Dana C. Price, Ya-Fan Chan, Arwa Gabr, Debashish Bhattacharya, Hwan Su Yoon

https://doi.org/10.1101/794941
Sequencing | PacBio RS II, Illumina HiSeq2500, Illumina NovaSeq6000
2019-10-01 | Clinical Immunology
Variants at potential loci associated with Sjogren's syndrome in Koreans: A genetic association study
Qingxia Shen, Kwanghwan Lee, Seong Kyu Han, Hyung-Joon Ahn, Sanguk Kim, Jae HoonLee

https://doi.org/10.1016/j.clim.2019.07.010
Sequencing | Illumina HiSeq2500
2019-10-01 | International Journal of Systematic and Evolutionary Microbiology
Undibacterium piscinae sp. nov., isolated from Korean shiner intestine
So-Yeon Lee, Woorim Kang, Pil Soo Kim?, Hyun Sik Kim?, Hojun Sung?, Na-Ri Shin?, Tae Woong Whon?, Ji-Hyun Yun?, Jae-Yun Lee?, June-Young Lee?, Mi-Ja Jung?, Yun-Seok Jeong?, Euon Jung Tak?, Jeong Eun Han?, Dong-Wook Hyun?, Myung-Suk Kang?, Ki-Eun Lee?, Byoung-Hee Lee?, Jin-Woo Bae

https://doi.org/10.1099/ijsem.0.003604
Sequencing | PacBio RS II
2019-09-30 | Journal of Microbiology
Antarctic tundra soil metagenome as useful natural resources of cold-active lignocelluolytic enzymes
Han Na Oh, Doyoung Park, Hoon Je Seong, Dockyu Kim, Woo Jun Sul

https://doi.org/10.1007/s12275-019-9217-1
Sequencing | PacBio RS II
2019-09-30 | ACS Omega
Detection and Quantification of GPCR mRNA: An Assessment and Implications of Data from High-Content Methods
Krishna Sriram, Shu Z. Wiley, Kevin Moyung, Matthew W. Gorr, Cristina Salmeron, Jordin Marucut, Randall P. French, Andrew M. Lowy, Paul A. Insel

https://doi.org/10.1021/acsomega.9b02811
Sequencing | Illumina NextSeq500
2019-09-23 | Biotechnology for Biofuels volume
Domestication of the novel alcohologenic acetogen Clostridium sp. AWRP: from isolation to characterization for syngas fermentation
Joungmin Lee, Jin Woo Lee, Cheol Gi Chae, Soo Jae Kwon, Yun Jae Kim, Jung-Hyun Lee, Hyun Sook Lee

https://doi.org/10.1186/s13068-019-1570-0
Sequencing | PacBio RS II
2019-09-20 | Communications Biology
Neutrophils homing into the retina trigger pathology in early age-related macular degeneration
Sayan Ghosh, Archana Padmanabhan, Tanuja Vaidya, Alan M. Watson, Imran A. Bhutto, Stacey Hose, Peng Shang, Nadezda Stepicheva, Meysam Yazdankhah, Joseph Weiss, Manjula Das, Santosh Gopikrishna, Aishwarya, Naresh Yadav, Thorsten Berger, Tak W. Mak, Shuli Xia, Jiang Qian, Gerard A. Lutty, Ashwath Jayagopal, J. Samuel Zigler Jr, Swaminathan Sethu, James T. Handa, Simon C. Watkins, Arkasubhra Ghosh, Debasish Sinha

https://doi.org/10.1038/s42003-019-0588-y
Sequencing
2019-09-12 | Cell Stem Cell
Mitigating Antagonism between Transcription and Proliferation Allows Near-Deterministic Cellular Reprogramming
Kimberley N. Babos, Kate E. Galloway, Kassandra Kisler, Madison Zitting, Yichen Li, Yingxiao Shi, Brooke Quintino, Robert H. Chow, Berislav V. Zlokovic, Justin K. Ichida

https://doi.org/10.1016/j.stem.2019.08.005
Sequencing | Library prep, Illumina NextSeq500
2019-09-12 | Microbiology Resource Announcements
Complete Genome Sequence of Phreatobacter sp. Strain NMCR1094, a Formate-Utilizing Bacterium Isolated from a Freshwater Stream
Kiwoon Baek, Ahyoung Choi

https://doi.org/10.1128/MRA.00860-19
Sequencing | PacBio RS II
2019-09-11 | Cancer Research
Hispanic/Latino gastric adenocarcinoma patients have distinct molecular profiles including a high rate of germline CDH1 mutations
Sam C. Wang, Yunku Yeu, Suntrea T.G. Hammer, Shu Xiao, Min Zhu, Changjin Hong, Lynn Y. Yoon, Ibrahim Nassour, Jeanne Shen, Deepak Agarwal, Scott I. Reznik, John C. Mansour, Adam C. Yopp, Hao Zhu, Tae Hyun Hwang, Matthew R. Porembka

https://doi.org/10.1158/0008-5472.CAN-19-2918
Sequencing | Illumina HiSeq2500
2019-09-05 | Microbiology Resource Announcements
Complete Genome Sequence of a Parabacteroides distasonis Strain (CavFT hAR46) Isolated from a Gut Wall-Cavitating Microlesion in a Patient with Severe Crohn’s Disease
Falong Yang, Anand Kumar, Karen Walston Davenport, Julia Mae Kelliher, Jessica C. Ezeji, Caryn E. Good, Michael R. Jacobs,Mathew Conger, Gail West, Claudio Fiocchi, Fabio Cominelli, Armand Earl Ko Dichosa, Alexander Rodriguez-Palacios

https://doi.org/10.1128/MRA.00585-19
Sequencing | PacBio RS II
2019-09-05 | Microbiology Resource Announcements
Complete Genome Sequence of Leisingera aquamixtae R2C4, Isolated from a Self-Regenerating Biocathode Consortium
Lina Bird, Brian J. Eddie, Anthony P. Malanoski, Princess Pinamang, Sarah M. Glaven

https://doi.org/10.1128/MRA.00833-19
Sequencing | PacBio RS II
2019-09-03 | Molecular Cancer Research
Identification of De Novo Enhancers Activated by TGFβ to Drive Expression of CDKN2A and B in HeLa Cells
Yen-Ting Liu, Lin Xu, Lynda Bennett, Jared C. Hooks, Jing Liu, Qinbo Zhou, Priscilla Liem, Yanbin Zheng, Stephen X. Skapek

https://doi.org/10.1158/1541-7786.MCR-19-0289
Sequencing | Illumina NextSeq500
2019-09-01 | International Journal of Systematic and Evolutionary Microbiology
Ruegeria lutea sp. nov., isolated from marine sediment, Masan Bay, South Korea
Jinsoo Kim, Da-Young Kim, Keun-Hyeok Yang?, Sungchul Kim?, Sang-Seob Lee

https://doi.org/10.1099/ijsem.0.003568
Sequencing | Illumina NovaSeq6000
2019-08-01 | Molecular Plant-Microbe Interactions
High Contiguity Whole Genome Sequence and Gene Annotation Resource for Two Venturia nashicola Isolates
Maxim Prokchorchik, Kyungho Won, Yoonyoung Lee, Eu Ddeum Choi, Cecile Segonzac, Kee Hoon Sohn

https://doi.org/10.1094/MPMI-03-19-0072-A
Sequencing | PacBio RS II
2019-08-01 | Fish & Shellfish Immunology
Immune and xenobiotic responses of glutathione S-Transferase theta (GST-θ) from marine invertebrate disk abalone (Haliotis discus discus): With molecular characterization and functional analysis
W.M. Gayashani Sandamalika, Thanthrige Thiunuwan Priyathilaka, Seongdo Lee, Hyerim Yang Jehee Lee

https://doi.org/10.1016/j.fsi.2019.04.004
Sequencing | Roche 454 GS-FLX
2019-08-01 | International Journal of Systematic and Evolutionary Microbiology
Shewanella psychromarinicola sp. nov., a psychrophilic bacterium isolated from pelagic sediment of the Ross Sea (Antarctica), and reclassification of Shewanella arctica Kim et al. 2012 as a later heterotypic synonym of Shewanella frigidimarina Bowman et al. 1997
Yeon Ju Hwang, Gwang Il Jang?, Byung Cheol Cho?, Jae Il Lee?, Chung Yeon Hwang

https://doi.org/10.1099/ijsem.0.003490
Sequencing | PacBio RS II
2019-07-26 | Current Microbiology
Mucilaginibacter terrigena sp. nov. sp., A Novel Member of the Family Sphingobacteriaceae
Leonid N. Ten, Na Yeong Jeon, Weilan Li, Young-Je Cho, Myung Kyum Kim, Seung-Yeol Lee, Alejandro P. Rooney, Hee-Young Jung

https://doi.org/10.1007/s00284-019-01748-y
Sequencing | Illumina NovaSeq6000
2019-07-20 | Journal of Phycology
Dictyochophyceae Plastid Genomes Reveal Unusual Variability in Their Organization
Kwi Young Han, Kacper Maciszewski, Louis Graf, Ji Hyun Yang, Robert A. Andersen, Anna Karnkowska, Hwan Su Yoon

https://doi.org/10.1111/jpy.12904
Sequencing | Illumina HiSeq2000
2019-07-19 | PLOS Biology
LATS1/2 suppress NFκB and aberrant EMT initiation to permit pancreatic progenitor differentiation
Caitlin M. Braitsch, D. Berfin Azizoglu,Yadanar Htike, Haley R. Barlow, Ulrike Schnell, Christopher P. Chaney, Thomas J. Carroll, Ben Z. Stanger, Ondine Cleaver

https://doi.org/10.1371/journal.pbio.3000382
Sequencing | Illumina NextSeq500
2019-07-11 | Microbiology Resource Announcements
Complete Genome Sequence of Kocuria indica CE7, Isolated from Human Skin
Kyoung Lee, Munkhtsatsral Ganzorig, Ji Yoon Jung, Sachin Kumar Badaya, Jae Yun Lim

https://doi.org/10.1128/MRA.00607-19
Sequencing | PacBio RS II
2019-06-13 | Mitochondrial DNA Part B
The mitochondrial genome of the goosander (Mergus merganser) determined using next-generation sequencing
Seon-Mi Lee, Hye Sook Jeon, Jung A Kim, Jisoo Kim, Jungeun Park, Hyun-Jong Kil

https://doi.org/10.1080/23802359.2019.1640080
Sequencing | Illumina HiSeq2500
2019-06-01 | Archives of Microbiology
Paenibacillus albus sp. nov., a UV radiation-resistant bacterium isolated from soil in Korea
Jun Hwee Jang, Soo Hyun Maeng, Srinivasan Sathiyaraj, Gayathri Subramani, Hee Young Jung, Myung Kyum Kim

https://doi.org/10.1007/s00203-019-01669-1
Sequencing | PacBio RS II
2019-06-01 | Soil Biology and Biochemistry
Local-scale variation of soil bacterial communities in ice-free regions of maritime Antarctica
Mincheol Kim, Hyun-Soo Lim, Chang-Uk Hyun, Ahnna Cho, Hyun-Ju Noh, Soon Gyu Hong, Ok-Sun Kim

https://doi.org/10.1016/j.soilbio.2019.03.011
Sequencing | Roche 454?GS FLX
2019-05-28 | Asian-Australasian Journal of Animal Sciences
Analysis of allele-specific expression using RNA-seq of the Korean native pig and Landrace reciprocal cross
Byeongyong Ahn, Min-Kyeung Choi, Joori Yum, In-Cheol Cho, Jin-Hoi Kim, Chankyu Park

https://doi.org/10.5713%2Fajas.19.0097
Sequencing | Illumina HiSeq2000
2019-05-09 | PLOS Pathogens
Multi-omics characterization of the necrotrophic mycoparasite Saccharomycopsis schoenii
Klara Junker, Anna Chailyan, Ana Hesselbart, Jochen Forster, Jurgen Wendland

https://doi.org/10.1371/journal.ppat.1007692
Sequencing | PacBio RS II
2019-05-02 | Microbiology Resource Announcements
First Complete Genome Sequence of Haematobacter massiliensis OT1 (Chromosome and Multiple Plasmids), Isolated from Human Skin
Jae Yun Lim, Munkhtsatsral Ganzorig, Shir-Ly Huang, Kyoung Lee

https://doi.org/10.1128/MRA.00292-19
Sequencing | PacBio RS II
2019-05-01 | Journal of Virology
A Highly Unusual V1 Region of Env in an Elite Controller of HIV Infection
Zachary A. Silver, Gordon M. Dickinson, Michael S. Seaman, Ronald C. Desrosiers

https://doi.org/10.1128/JVI.00094-19
Sequencing | PacBio RS II
2019-03-25 | Developmental Cell
YAP Partially Reprograms Chromatin Accessibility to Directly Induce Adult Cardiogenesis In Vivo
Tanner O. Monroe, Matthew C. Hill, Yuka Morikawa, John P. Leach, Todd Heallen, Shuyi Cao, Peter H.L. Krijger, Wouter de Laat, Xander H.T. Wehrens, George G. Rodney, James F. Martin

https://doi.org/10.1016/j.devcel.2019.01.017
Sequencing | Illumina NextSeq500
2019-03-15 | Frontiers in Microbiology
Prediction of Host-Specific Genes by Pan-Genome Analyses of the Korean Ralstonia solanacearum Species Complex
Heejung Cho, Eun-Sung Song, Sunggi Heu, JeongHo Baek, Young Kee Lee, Seungdon Lee, Seon-Woo Lee, Dong Suk Park, Tae-Ho Lee, Jeong-Gu Kim, Ingyu Hwang

https://doi.org/10.3389/fmicb.2019.00506
Sequencing | PacBio
2019-03-01 | Aquaculture and Fisheries
Full-length mRNA sequencing in Saccharina japonica and identification of carbonic anhydrase genes
Yanhui Bi, Jiali Li, Zhigang Zhou

https://doi.org/10.1016/j.aaf.2018.11.002
Sequencing | PacBio RS II
2019-02-27 | Cell Death & Disease
Organoids as a new model for improving regenerative medicine and cancer personalized therapy in renal diseases
Ludovica Grassi, Romina Alfonsi, Federica Francescangeli, Michele Signore, Maria Laura De Angelis, Antonio Addario, Manuela Costantini, Elisabetta Flex, Andrea Ciolfi, Simone Pizzi, Alessandro Bruselles, Matteo Pallocca, Giuseppe Simone, Mustapha Haoui, Mario Falchi, Michele Milella, Steno Sentinelli, Paola Di Matteo, Emilia Stellacci, Michele Gallucci, Giovanni Muto, Marco Tartaglia, Ruggero De Maria, Desiree Bonci

https://doi.org/10.1038/s41419-019-1453-0
Sequencing | Illumina NovaSeq6000
2019-02-25 | Nature Ecology & Evolution
Antarctic blackfin icefish genome reveals adaptations to extreme environments
Bo-Mi Kim, Angel Amores, Seunghyun Kang, Do-Hwan Ahn, Jin-Hyoung Kim, Il-Chan Kim, Jun Hyuck Lee, Sung Gu Lee, Hyoungseok Lee, Jungeun Lee, Han-Woo Kim, Thomas Desvignes, Peter Batzel, Jason Sydes, Tom Titus, Catherine A. Wilson, Julian M. Catchen, Wesley C. Warren, Manfred Schartl, H. William Detrich III, John H. Postlethwait, Hyun Park

https://doi.org/10.1038/s41559-019-0812-7
Sequencing | PacBio Sequel
2019-02-22 | Scientific Reports
Genome analysis of the rice coral Montipora capitata
Alexander Shumaker, Hollie M. Putnam, Huan Qiu, Dana C. Price, Ehud Zelzion, Arye Harel, Nicole E. Wagner, Ruth D. Gates, Hwan Su Yoon, Debashish Bhattacharya

https://doi.org/10.1038/s41598-019-39274-3
Sequencing | PacBio RS II
2019-02-22 | Scientific Reports
Evolutionary dynamics of the chromatophore genome in three photosynthetic Paulinella species
Duckhyun Lhee, Ji-San Ha, Sunju Kim, Myung Gil Park, Debashish Bhattacharya, Hwan Su Yoon

https://doi.org/10.1038/s41598-019-38621-8
Sequencing | Illumina HiSeq2500
2019-02-20 | Molecules
Therapeutic Effects of HIF-1α on Bone Formation around Implants in Diabetic Mice Using Cell-Penetrating DNA-Binding Protein
Sang-Min Oh, Jin-Su Shin, Il-Koo Kim, Jung-Ho Kim, Jae-Seung Moon, Sang-Kyou Lee, Jae-Hoon Lee

https://doi.org/10.3390/molecules24040760
Sequencing | Illumina NextSeq500
2019-02-13 | Antonie van Leeuwenhoek
Cohnella candidum sp. nov., radiation-resistant bacterium from soil
SooHyun Maeng, Myung Kyum Kim, Jun Hwee Jang, Hana Yi, Gayathri Subramani

https://doi.org/10.1007/s10482-019-01233-3
Sequencing | PacBio RS II
2019-02-08 | Biotechnology and Bioprocess Engineering
Genomic Characterization of a Newly Isolated Rhizobacteria Sphingomonas panacis Reveals Plant Growth Promoting Effect to Rice
Yeon-Ju Kim, Jaewon Lim, Johan Sukweenadhi, Ji Woong Seok, Sang-Won Lee, Jong Chan Park, Assiya Taizhanova, Donghyuk Kim, Deok Chun Yang

https://doi.org/10.1007/s12257-018-0386-2
Sequencing | PacBio RS II
2019-01-16 | Molecular Psychiatry
Negr1 controls adult hippocampal neurogenesis and affective behaviors
Kyungchul Noh, Hyunkyoung Lee, Tae-Yong Choi, Yeonhee Joo, Soo-Joeng Kim, Hyejin Kim, Jin Young Kim, Jeong Won Jahng, Soojin Lee, Se-Young Choi, Sung Joong Lee

https://doi.org/10.1038/s41380-018-0347-3
Sequencing, Microarray, Bioinformatics | Library prep, Illumina NovaSeq6000
2019-01-16 | Microbial Genomics
Evolution of a clade of Acinetobacter baumannii global clone 1, lineage 1 via acquisition of carbapenem- and aminoglycoside-resistance genes and dispersion of ISAba1
Mohammad Hamidian, Jane Hawkey, Ryan Wick, Kathryn E. Holt, Ruth M. Hall

https://doi.org/10.1099%2Fmgen.0.000242
Sequencing | PacBio
2019-01-09 | Frontiers in Microbiology
“Candidatus Thermonerobacter thiotrophicus,” A Non-phototrophic Member of the Bacteroidetes/Chlorobi With Dissimilatory Sulfur Metabolism in Hot Spring Mat Communities
Vera Thiel, Amaya M. Garcia Costas, Nathaniel W. Fortney, Joval N. Martinez, Marcus Tank, Eric E. Roden, Eric S. Boyd, David M. Ward, Satoshi Hanada, Donald A. Bryant

https://doi.org/10.3389/fmicb.2018.03159
Sequencing | Illumina HiSeq2000, NextSeq500
2018-12-12 | Frontiers in Genetics
First Draft Genome for Red Sea Bream of Family Sparidae
Ga-Hee Shin, Younhee Shin, Myunghee Jung, Ji-man Hong, Sangmin Lee, Sathiyamoorthy Subramaniyam, Eun-Soo Noh, Eun-Ha Shin, Eun-Hee Park, Jung Youn Park, Young-Ok Kim, Kwnag-Min Choi, Bo-Hye Nam, Chan-Il Park

https://doi.org/10.3389/fgene.2018.00643
Sequencing | Illumina HiSeq2000
2018-12-09 | Plant Biotechnology Journal
Single?molecule real?time sequencing reveals diverse allelic variations in carotenoid biosynthetic genes in pepper (Capsicum spp.)
Hyo?Bong Jeong, Min?Young Kang, Ayoung Jung, Koeun Han, Joung?Ho Lee, Jinkwan Jo, Hea?Young Lee, Jong?Wook An, Suna Kim, Byoung?Cheorl Kang

https://doi.org/10.1111%2Fpbi.13039
Sequencing | PacBio
2018-12-06 | Microbiology Resource Announcements
Complete Genome Sequence of WM99c, an Antibiotic-Resistant Acinetobacter baumannii Global Clone 2 (GC2) Strain Representing an Australian GC2 Lineage
Steven J Nigro, Ryan Wick, Kathryn E Holt, Ruth M Hall

https://doi.org/10.1128/mra.01199-18
Sequencing | PacBio
2018-10-16 | International Journal of Molecular Sciences
Transcriptome Profiling of Two Ornamental and Medicinal Papaver Herbs
Jaehyeon Oh, Younhee Shin, In Jin Ha, Min Young Lee, Seok-Geun Lee, Byeong-Chul Kang, Dongsoo Kyeong, Dowan Kim

https://doi.org/10.3390/ijms19103192
Sequencing | PacBio RS II
2018-10-10 | Cell Death & Disease
Increasing G9a automethylation sensitizes B acute lymphoblastic leukemia cells to glucocorticoid-induced death
Coralie Poulard, Estelle Baulu, Brian H. Lee, Miles A. Pufall, Michael R. Stallcup

https://doi.org/10.1038/s41419-018-1110-z
Sequencing | Illumina NextSeq500
2018-10-08 | The Journal of Clinical Investigation
ΔNp63-driven recruitment of myeloid-derived suppressor cells promotes metastasis in triple-negative breast cancer
Sushil Kumar, David W. Wilkes, Nina Samuel, Mario Andres Blanco, Anupma Nayak, Kevin Alicea-Torres, Christian Gluck, Satrajit Sinha, Dmitry Gabrilovich, Rumela Chakrabarti

https://doi.org/10.1172/JCI99673
Sequencing | Illumina
2018-10-01 | Current Gene Therapy
EZH2 RIP-seq Identifies Tissue-specific Long Non-coding RNAs
Yan Wang, Yinping Xie, Lili Li, Yuan He, Di Zheng, Pengcheng Yu, Ling Yu, Lixu Tang, Yibin Wang, Zhihua Wang

https://doi.org/10.2174%2F1566523218666181008125010
Sequencing | Library prep, Illumina NextSeq500
2018-09-20 | GigaScience
Exploring the genome and transcriptome of the cave nectar bat Eonycteris spelaea with PacBio long-read sequencing
Ming Wen, Justin H J Ng, Feng Zhu, Yok Teng Chionh, Wan Ni Chia, Ian H Mendenhall, Benjamin PY-H Lee, Aaron T Irving, Lin-Fa Wang

https://doi.org/10.1093/gigascience/giy116
Sequencing | PacBio RS II
2018-09-03 | Microbial Cell Factories
Genome alterations associated with improved transformation efficiency in Lactobacillus reuteri
Laura Ortiz-Velez, Javiera Ortiz-Villalobos, Abby Schulman, Jee-Hwan Oh, Jan-Peter van Pijkeren, Robert A. Britton

https://doi.org/10.1186/s12934-018-0986-8
Sequencing | PacBio RS II
2018-09-01 | Molecular Biology and Evolution
Genomic Analysis of Picochlorum Species Reveals How Microalgae May Adapt to Variable Environments
Fatima Foflonker, Devin Mollegard, Meichin Ong, Hwan Su Yoon, Debashish Bhattacharya

https://doi.org/10.1093/molbev/msy167
Sequencing | PacBio RS II
2018-08-22 | BMC Genomics
Complete genome of streamlined marine actinobacterium Pontimonas salivibrio strain CL-TW6T adapted to coastal planktonic lifestyle
Byung Cheol Cho, Stephen C. Hardies, Gwang Il Jang, Chung Yeon Hwang

https://doi.org/10.1186/s12864-018-5019-9
Sequencing | PacBio RS II
2018-08-20 | International Journal of Systematic and Evolutionary Microbiology
Nitrosarchaeum koreense gen. nov., sp. nov., an aerobic and mesophilic, ammonia-oxidizing archaeon member of the phylum Thaumarchaeota isolated from agricultural soil
Man-Young Jung, Md. Arafat Islam, Joo-Han Gwak?, Jong-Geol Kim?, Sung-Keun Rhee

https://doi.org/10.1099/ijsem.0.002926
Sequencing | Illumina Genome Analyzer Iix
2018-08-19 | Applied Microbiology and Biotechnology
2,3-Butanediol production by the non-pathogenic bacterium Paenibacillus brasilensis
Beatriz do Carmo Dias, Maria Eduarda do Nascimento Vitorino Lima, Renata Estebanez Vollu, Fabio Faria da Mota, Antonio Jorge Ribeiro da Silva, Aline Machado de Castro, Denise Maria Guimaraes Freire, Lucy Seldin

https://doi.org/10.1007/s00253-018-9312-y
Sequencing | PacBio PacBio RS II
2018-08-13 | Nucleic Acids Research
Deep genome annotation of the opportunistic human pathogen Streptococcus pneumoniae D39
Jelle Slager, Rieza Aprianto, Jan-Willem Veening

https://doi.org/10.1093/nar/gky725
Sequencing | PacBio RS II
2018-08-02 | The American Journal of Human Genetics (AJHG)
Argininosuccinate Lyase Deficiency Causes an Endothelial-Dependent Form of Hypertension
Jordan Kho, Xiaoyu Tian, Wing-Tak Wong, Terry Bertin, Ming-Ming Jiang, Shan Chen, Zixue Jin, Oleg A. Shchelochkov, Lindsay C. Burrage, Anilkumar K. Reddy, Hong Jiang, Reem Abo-Zahrah, Shuangtao Ma, Ping Zhang, Karl-Dimiter Bissig, Jean J. Kim, Sridevi Devaraj, George G. Rodney, Ayelet Erez, Nathan S. Bryan, Sandesh C.S. Nagamani, Brendan H. Lee

https://doi.org/10.1016%2Fj.ajhg.2018.07.008
Sequencing | Illumina NextSeq500
2018-08-01 | Genes & Development
Mutations in microRNA processing genes in Wilms tumors derepress the IGF2 regulator PLAG1
Kenneth S. Chen, Emily K. Stroup, Albert Budhipramono, Dinesh Rakheja, Diana Nichols-Vinueza, Lin Xu, Sarai H. Stuart, Abhay A. Shukla, Claudette Fraire, Joshua T. Mendell, James F. Amatruda

https://doi.org/10.1101%2Fgad.313783.118
Sequencing | Illumina NextSeq500
2018-07-11 | Cancer Reports
WT-CLS1 is a rhabdoid tumor cell line and can be inhibited by miR-16
Emily Kunce Stroup, Yunku Yeu, Albert Budhipramono, Tae Hyun Hwang, Dinesh Rakheja, Anat Erdreich-Epstein, Theodore W. Laetsch, James F. Amatruda, Kenneth S. Chen

https://doi.org/10.1002/cnr2.1110
Sequencing | Illumina HiSeq2000, NextSeq500
2018-06-18 | Proceedings of the National Academy of Sciences (PNAS)
Serine metabolism in the brain regulates starvation-induced sleep suppression in Drosophila melanogaster
Jun Young Sonn, Jongbin Lee, Min Kyung Sung, Hwajung Ri, Jung Kyoon Choi, Chunghun Lim, Joonho Choe

https://doi.org/10.1073/pnas.1719033115
Sequencing | Illumina HiSeq2500
2018-05-22 | Frontiers in Pharmacology
GPCRomics: GPCR Expression in Cancer Cells and Tumors Identifies New, Potential Biomarkers and Therapeutic Targets
Paul A. Insel, Krishna Sriram, Shu Z. Wiley, Andrea Wilderman, Trishna Katakia, Thalia McCann, Hiroshi Yokouchi, Lingzhi Zhang, Ross Corriden, Dongling Liu, Michael E. Feigin, Randall P. French, Andrew M. Lowy, Fiona Murray

https://doi.org/10.3389/fphar.2018.00431
Sequencing | Illumina NextSeq500
2018-04-28 | Mitochondrial DNA Part B
The complete chloroplast genome of Chrysanthemum boreale (Asteraceae)
So Youn Won, Jae-A Jung, Jung Sun Kim

https://doi.org/10.1080/23802359.2018.1468225
Sequencing | PacBio RS II
2018-04-27 | Mitochondrial DNA Part B
The complete mitochondrial genome sequence of Chrysanthemum boreale (Asteraceae)
So Youn Won, Jae-A Jung, Jung Sun Kim

https://doi.org/10.1080/23802359.2018.1468226
Sequencing | PacBio RS II
2018-03-14 | Cell Host & Microbe
Inflammation-Modulated Metabolic Reprogramming Is Required for DUOX-Dependent Gut Immunity in Drosophila
Kyung-Ah Lee, Kyu-Chan Cho, Boram Kim, In-Hwan Jang, Kibum Nam, Young Eun Kwon, Myungjin Kim, Do Young Hyeon, Daehee Hwang, Jae-Hong Seol, Won-Jae Lee

https://doi.org/10.1016/j.chom.2018.01.011
Sequencing | Illumina HiSeq2000
2018-02-22 | Cell
Dissecting the Causal Mechanism of X-Linked Dystonia-Parkinsonism by Integrating Genome and Transcriptome Assembly
Tatsiana Aneichyk, William T Hendriks, Rachita Yadav, David Shin, Dadi Gao, Christine A Vaine, Ryan L Collins, Aloysius Domingo, Benjamin Currall, Alexei Stortchevoi, Trisha Multhaupt-Buell, Ellen B Penney, Lilian Cruz, Jyotsna Dhakal, Harrison Brand, Carrie Hanscom, Caroline Antolik, Marisela Dy, Ashok Ragavendran, Jason Underwood, Stuart Cantsilieris, Katherine M Munson, Evan E Eichler, Patrick Acuna, Criscely Go, R Dominic G Jamora, Raymond L Rosales, Deanna M Church, Stephen R Williams, Sarah Garcia, Christine Klein, Ulrich Muller, Kirk C Wilhelmsen, H T Marc Timmers, Yechiam Sapir, Brian J Wainger, Daniel Henderson, Naoto Ito, Neil Weisenfeld, David Jaffe, Nutan Sharma, Xandra O Breakefield, Laurie J Ozelius, D Cristopher Bragg, Michael E Talkowski

https://doi.org/10.1016/j.cell.2018.02.011
Sequencing | PacBio RS II
2018-01-03 | The FASEB Journal
GPR68, a proton-sensing GPCR, mediates interaction of cancer-associated fibroblasts and cancer cells
Shu Z. Wiley, Krishna Sriram, Wenjing Liang, Sarah E. Chang, Randall French, Thalia McCann, Jason Sicklick, Hiroshi Nishihara, Andrew M. Lowy, Paul A. Insel

https://doi.org/10.1096/fj.201700834R
Sequencing | Illumina NextSeq500
2022-11-06 | International Journal of Molecular Sciences
Germplasm Screening Using DNA Markers and Genome-Wide Association Study for the Identification of Powdery Mildew Resistance Loci in Tomato
Jiyeon Park, Siyoung Lee, Yunseo Choi, Girim Park, Seoyeon Park, Byoungil Je, Younghoon Park

https://doi.org/10.3390/ijms232113610
Genotyping | Custom array, Tomato
2022-10-19 | Agronomy
A Novel Locus for Bakanae Disease Resistance, qBK4T, Identified in Rice
Sais-Beul Lee, Ji-Yoon Lee, Ju-Won Kang, Hyunggon Mang, Nkulu Rolly Kabange, Gi-Un Seong, Youngho Kwon, So-Myeong Lee, Dongjin Shin, Jong-Hee Lee, Jun-Hyeon Cho, Ki-Won Oh, Dong-Soo Park

https://doi.org/10.3390/agronomy12102567
Genotyping | KNU Axiom Oryza 580 K Genotyping Array
2022-09-01 | Neurobiology of Aging
Structural covariance changes in major cortico-basal ganglia and thalamic networks in amyloid-positive patients with white matter hyperintensities
Sang Joon Son, Chang Hyung Hong, Na-Rae Kim, Jin Wook Choi, Hyun Woong Roh, Heirim Lee, Sang Won Seo, Seong Hye Choi, Eun-Joo Kim, Byeong C Kim, Seong Yoon Kim, Jaeyoun Cheong, So Young Moon, Bumhee Park

https://doi.org/10.1016/j.neurobiolaging.2022.05.010
Genotyping | ThermoFisher Axiom KORV1.0?96 Array
2022-06-25 | International Journal of Obesity
Dissecting the clinical relevance of polygenic risk score for obesity?a cross-sectional, longitudinal analysis
Eun Kyung Choe, Manu Shivakumar, Seung Mi Lee, Anurag Verma, Dokyoon Kim

https://doi.org/10.1038/s41366-022-01168-2
Genotyping | ThermoFisher Axiom KORV1.0?96 Array
2022-05-28 | Cancer Genetics
Discovery of BRCA1/BRCA2 founder variants by haplotype analysis
Won Kyung Kwon, Hyeok-Jae Jang, Jeong Eon Lee, Yeon Hee Park, Jai Min Ryu, Jonghan Yu, Ja-Hyun Jang, Jong-Won Kim

https://doi.org/10.1016/j.cancergen.2022.05.042
Genotyping | ThermoFisher Axiom KORV1.0?96 Array
2022-04-09 | Rice
Development of a Temperate Climate-Adapted indica Multi-stress Tolerant Rice Variety by Pyramiding Quantitative Trait Loci
Na-Hyun Shin, Jae-Hyuk Han, Kieu Thi Xuan Vo, Jeonghwan Seo, Ian Paul Navea, Soo-Cheul Yoo, Jong-Seong Jeon, Joong Hyoun Chin

https://doi.org/10.1186/s12284-022-00568-2
Genotyping | KNU Axiom Oryza 580 K Genotyping Array
2022-02-04 | Scientific Reports
Leveraging deep phenotyping from health check-up cohort with 10,000 Korean individuals for phenome-wide association study of 136 traits
Eun Kyung Choe, Manu Shivakumar, Anurag Verma, Shefali Setia Verma, Seung Ho Choi, Joo Sung Kim, Dokyoon Kim

https://doi.org/10.1038/s41598-021-04580-2
Genotyping | ThermoFisher Axiom KORV1.0?96 Array
2022-01-24 | Scientific Reports
Plasma protein biomarker model for screening Alzheimer disease using multiple reaction monitoring-mass spectrometry
Yeongshin Kim, Jaenyeon Kim, Minsoo Son, Jihyeon Lee, Injoon Yeo, Kyu Yeong Choi, Hoowon Kim, Byeong C. Kim, Kun Ho Lee, Youngsoo Kim

https://doi.org/10.1038/s41598-022-05384-8
Genotyping | ThermoFisher Axiom KORV1.0?96 Array
2022-01-19 | Psychiatry Investigation
Baseline Clinical and Biomarker Characteristics of Biobank Innovations for Chronic Cerebrovascular Disease With Alzheimer’s Disease Study: BICWALZS
Hyun Woong Roh, Na-Rae Kim, Dong-gi Lee, Jae-Youn Cheong, Sang Won Seo, Seong Hye Choi, Eun-Joo Kim, Soo Hyun Cho, Byeong C. Kim, Seong Yoon Kim, Eun Young Kim, Jaerak Chang, Sang Yoon Lee, Dukyong Yoon, Jin Wook Choi, Young-Sil An, Hee Young Kang, Hyunjung Shin, Bumhee Park, Sang Joon Son, Chang Hyung Hong

https://doi.org/10.30773%2Fpi.2021.0335
Genotyping | ThermoFisher Axiom KORV1.1-96 Array
2021-09-30 | Scientific Reports
Cortical thickness is differently associated with ALDH2 rs671 polymorphism according to level of amyloid deposition
Yong Hyuk Cho, Heirim Lee, Na-Rae Kim, Jin Wook Choi, Hyun Woong Roh, Jae Ho Ha, Chang Hyung Hong, Sang Won Seo, Seong Hye Choi, Eun-Joo Kim, Byeong C. Kim, Seong Yoon Kim, Jaeyoun Cheong, Bumhee Park, Sang Joon Son

https://doi.org/10.1038/s41598-021-98834-8
Genotyping | ThermoFisher Axiom KORV1.0?96 Array
2021-09-02 | Translational and Clinical Pharmacology
Comprehensive analysis of important pharmacogenes in Koreans using the DMET™ platform
Byungwook Kim, Deok Yong Yoon, SeungHwan Lee, In-Jin Jang, Kyung-Sang Yu, Joo-Youn Cho, Jaeseong Oh

https://doi.org/10.12793%2Ftcp.2021.29.e14
Genotyping | ThermoFisher DMET Plus
2021-08-31 | Cancer Science
Impact of?UGT1A1?genotype on the efficacy and safety of irinotecan?based chemotherapy in metastatic colorectal cancer
Satoru Iwasa, Kei Muro, Satoshi Morita, Young Suk Park, Masato Nakamura, Masahito Kotaka, Tomohiro Nishina, Hiroshi Matsuoka, Joong Bae Ahn, Keun?Wook Lee, Yong Sang Hong, Sae Won Han, Sang?Hee Cho, Dong?Sheng Zhang, Wei?Jia Fang, Li Bai, Xiang?Lin Yuan, Ying Yuan, Yasuhide Yamada, Junichi Sakamoto, Tae Won Kim

https://doi.org/10.1111%2Fcas.15092
Genotyping | TaqMan assay
2021-08-17 | Scientific Reports
Genetic diversity analysis of Korean peanut germplasm using 48 K SNPs ‘Axiom_Arachis’ Array and its application for cultivar differentiation
Rizwana Begum Syed Nabi, Kwang-Soo Cho, Rupesh Tayade, Ki Won Oh, Myoung Hee Lee, Jung In Kim, Sungup Kim, Suk-Bok Pae, Eunyoung Oh

https://doi.org/10.1038/s41598-021-96074-4
Genotyping | Custom array, Peanut
2021-08-11 | Frontiers in Psychiatry
Possible Association of Polymorphisms in Ubiquitin Specific Peptidase 46 Gene With Post-traumatic Stress Disorder
Jun Ho Seo, Tae Yong Kim, Se Joo Kim, Jin Hee Choi, Hyung Seok So, Jee In Kang

https://doi.org/10.3389%2Ffpsyt.2021.663647
Genotyping, Bioinformatics | SNaPshot assay
2021-07-14 | Frontiers in Plant Science
Chromosome Level Assembly of Homozygous Inbred Line ‘Wongyo 3115’ Facilitates the Construction of a High-Density Linkage Map and Identification of QTLs Associated With Fruit Firmness in Octoploid Strawberry (Fragaria × ananassa)
Hye-Eun Lee, Abinaya Manivannan, Sun Yi Lee, Koeun Han, Jun-Geol Yeum, Jinkwan Jo, Jinhee Kim, Il Rae Rho, Ye-Rin Lee, Eun Su Lee, Byoung-Cheorl Kang, Do-Sun Kim

https://doi.org/10.3389/fpls.2021.696229
Genotyping | ThermoFisher Axiom Strawberry Genotyping Array
2021-06-06 | Genes & Genomics
New susceptible locus, rs9428555, is associated with pediatric?onset immunoglobulin A nephropathy and immunoglobulin A vasculitis in Koreans
Minho?Lee, Gunhee?Le, Hee?Gyung?Kang, Jin?Soon?Suh

https://doi.org/10.1007/s13258-021-01120-0
Genotyping | ThermoFisher Axiom KORV1.0?96 Array
2021-06-01 | Drug Design, Development and Therapy
Pharmacokinetics, Tolerability and Pharmacogenetics of DA-8031 After Multiple Ascending Doses in Healthy Male Subjects
Sejung Hwang, Dae Young Lee, Joo-Youn Cho, Jae-Yong Chung, In-Jin Jang, Kyung-Sang Yu, SeungHwan Lee

https://doi.org/10.2147%2FDDDT.S309763
Genotyping | ThermoFisher DMET Plus
2021-05-01 | Animal Bioscience
Genetic characteristics of Korean Jeju Black cattle with high density single nucleotide polymorphisms
M. Zahangir Alam, Yun-Mi Lee, Hyo-Jung Son, Lauren H. Hanna, David G. Riley, Hideyuki Mannen, Shinji Sasazaki, Se Pill Park, Jong-Joo Kim

https://doi.org/10.5713%2Fajas.19.0888
Genotyping | Custom array, Cattle, Cow
2021-02-02 | Journal of Personalized Medicine
RMR-Related MAP2K6 Gene Variation on the Risk of Overweight/Obesity in Children: A 3-Year Panel Study
Myoungsook Lee, Yunkyoung Lee, Inhae Kang, Jieun Shin, Sungbin R. Sorn

https://doi.org/10.3390/jpm11020091
Genotyping | ThermoFisher Genome-Wide Human SNP Array 6.0
2021-01-12 | Cells
Identification of Cathepsin D as a Plasma Biomarker for Alzheimer’s Disease
Jae-Whan Kim, Soon-Young Jung, Youngbin Kim, Hansol Heo, Chang-Hyung Hong, Sang-Won Seo, Seong-Hye Choi, Sang-Joon Son, Seongju Lee, Jaerak Chang

https://doi.org/10.3390/cells10010138
Genotyping | ThermoFisher Axiom KORV1.0?96 Array
2021-01-01 | Clinical and Translational Science
An Investigation of the Metabolism and Excretion of KD101 and Its Interindividual Differences: A Microtracing Mass Balance Study in Humans
Anhye Kim, Stephen R. Dueker, Jun Gi Hwang, Jangsoo Yoon, Sang-Won Lee, Hye Suk Lee, Byung-Yong Yu, Kyung-Sang Yu, Howard Lee

https://doi.org/10.1111/cts.12848
Genotyping | ThermoFisher DMET Plus
2020-12-24 | Agronomy
Mapping Quantitative Trait Loci for Yield Potential Traits in Wheat Recombinant Inbred Lines
Chon-Sik Kang, Young-Jun Mo, Kyeong-Min Kim, Kyeong-Hoon Kim, Jae-Buhm Chun, Chul-Soo Park, Seong-Woo Cho

https://doi.org/10.3390/agronomy11010022
Genotyping | ThermoFisher Axiom 35K Wheat Breeder’s Genotyping Array
2020-11-24 | Endocrinology and Metabolism
Identification of Novel Genetic Variants Related to Trabecular Bone Score in Community-Dwelling Older Adults
Sung Hye Kong, Ji Won Yoon, Jung Hee Kim, JooYong Park, Jiyeob Choi, Ji Hyun Lee, A Ram Hong, Nam H. Cho, Chan Soo Shin

https://doi.org/10.3803%2FEnM.2020.735
Genotyping | ThermoFisher Genome-Wide Human SNP Array 5.0, ThermoFisher Axiom KORV1.1-96 Array
2020-10-15 | BMC Gastroenterology
The association of genetic polymorphisms with nonalcoholic fatty liver disease in a longitudinal study
Goh Eun Chung, Eunsoon Shin, Min-Sun Kwak, Jong In Yang, Jong-Eun Lee, Eun Kyung Choe, Jeong Yoon Yim

https://doi.org/10.1186/s12876-020-01469-8
Genotyping | ThermoFisher Axiom KORV1.0?96 Array
2020-08-12 | Frontiers in Aging Neuroscience
The Aging Slopes of Brain Structures Vary by Ethnicity and Sex: Evidence From a Large Magnetic Resonance Imaging Dataset From a Single Scanner of Cognitively Healthy Elderly People in Korea
Yu Yong Choi, Jang Jae Lee, Kyu Yeong Choi, Eun Hyun Seo, IL Han Choo, Hoowon Kim, Min-Kyung Song, Seong-Min Choi, Soo Hyun Cho, Byeong C. Kim, Kun Ho Lee

https://doi.org/10.3389/fnagi.2020.00233
Genotyping | ThermoFisher Axiom KORV1.0?96 Array
2020-06-01 | bioRxiv
Phenome-wide association study of a comprehensive health check-up database in a Korea population: Clinical application & trans-ethnic comparison
Eun Kyung Choe, Manu Shivakumar, Anurag Verma, Shefali Setia Verma, Seung Ho Choi, Joo Sung Kim, Dokyoon Kim

https://doi.org/10.1101/2020.05.31.126201
Genotyping | ThermoFisher Axiom KORV1.0?96 Array
2020-04-04 | International Journal of Molecular Sciences
A Machine Learning-Based Identification of Genes Affecting the Pharmacokinetics of Tacrolimus Using the DMETTM Plus Platform
Jeong-An Gim, Yonghan Kwon, Hyun A Lee, Kyeong-Ryoon Lee, Soohyun Kim, Yoonjung Choi, Yu Kyong Kim, Howard Lee

https://doi.org/10.3390/ijms21072517
Genotyping | ThermoFisher DMET Plus
2020-03-02 | Clinical and Translational Gastroenterology
A Novel Susceptibility Locus Near GRIK2 Associated With Erosive Esophagitis in a Korean Cohort
Eun Hyo Jin, Boram Park, Young Sun Kim, Eun Kyung Choe, Seung Ho Choi, Joo Sung Kim, Sung-Ae Jung

https://doi.org/10.14309%2Fctg.0000000000000145
Genotyping | ThermoFisher Axiom KORV1.0?96 Array
2020-02-21 | PLOS One
A genome-wide association study on liver enzymes in Korean population
Ji Yeon Seo, Jong-Eun Lee, Goh Eun Chung, Eunsoon Shin, Min-Sun Kwak, Jong In Yang, Jeong Yoon Yim

https://doi.org/10.1371/journal.pone.0229374
Genotyping | ThermoFisher Axiom Customized Biobank Genotyping Arrays
2020-01-16 | Research Square
Genetic characteristics and diversity of Korean Jeju Black cattle by whole genome SNP markers
Alam MZ, Son HJ, Lee YM, Hanna LH, Riley D, Mannen H, Sasazaki S, Park SP, Kim JJ

https://doi.org/10.21203/rs.2.21018/v1
Genotyping | Illumina Bovine 50K v.3 BeadChip
2019-09-09 | Anxiety and mood
Associations of Ubiquitin-Specific Protease Genes with Resilience and Social Anxiety in Healthy Youths
Jun Ho Seo, Chun Il Park, Se Joo Kim, Jee In Kang

https://doi.org/10.24986/anxmod.2019.15.2.122
Genotyping | SNaPshot assay
2019-08-13 | Nutrition Research and Practice
Association of circulating 25-hydroxyvitamin D levels with hypertension and blood pressure values in Korean adults: A Mendelian randomization study on a subset of the Korea National Health and Nutrition Survey 2011?2012 population
So-Young Kwak, Yoonsu Cho, Hannah Oh, Min-Jeong Shin

https://doi.org/10.4162/nrp.2019.13.6.498
Genotyping | TaqMan assay, Fluidigm assay
2019-07-01 | Alzheimer's & Dementia
P3-119: ATTENTION IS PREDICTED BY ALZHEIMER'S DISEASE POLYGENIC RISK SCORE IN TYPICALLY DEVELOPING CHILDREN MORE THAN CHILDREN WITH ATTENTION/DEFICIT-HYPERACTIVITY DISORDER
Woon Yoon, Tetyana Zayats, Hyo-Won Kim, Keejeong Park, Raymond Walter, Benjamin Neale

https://doi.org/10.1016/j.jalz.2019.06.3147
Genotyping | ThermoFisher GWAS
2019-07-01 | Alzheimer's & Dementia
P3-120: MOLECULAR GENETIC ANALYSIS OF APP , PSEN 1, AND PSEN 2 GENES IN CHINESE PATIENTS WITH ALZHEIMER'S DISEASE
Yafang Zhou, Bin Jiao,Lina Guo, Xinxin Liao, Beisha Tang, Lu Shen

https://doi.org/10.1016/j.jalz.2019.06.3148
Genotyping, Resequencing
2019-06-27 | Journal of Viral Heptitis
GWAS identifying HLA-DPB1 gene variants associated with responsiveness to hepatitis B virus vaccination in Koreans: Independent association of HLA-DPB1*04:02 possessing rs1042169 G - rs9277355 C - rs9277356 A
Soie Chung, Eun Youn Roh, Boram Park, Yunhwan Lee, Sue Shin, Jong Hyun Yoon, Eun Young Song

https://doi.org/10.1111/jvh.13168
Genotyping | ThermoFisher Axiom Customized Biobank Genotyping Array
2019-06-27 | Evolutionary Bioinformatics
Identifying Loci Under Positive Selection in Yellow Korean Cattle (Hanwoo)
Yi Li, Yun-Mi Lee, You-Sam Kim, Se-Pil Park, Jong-Joo Kim

https://doi.org/10.1177/1176934319859001
Genotyping | Illumina BovineSNP50 BeadChip
2019-04-30 | Clinical Psychopharmacology and Neuroscience
Predicting Behavior Problems in Korean Preschoolers: Interactions of the SLC6A4 Gene and Maternal Negative Affectivity
Junghee Ha, Hey Jung Jun, Hyewon Shin, Ick Joong Chung, Eunmie Park, Sung Kil Min, Eunjoo Kim

https://doi.org/10.9758%2Fcpn.2019.17.2.200
Genotyping
2019-03-12 | Dementia and Geriatric Cognitive Disorders Extra
Cerebrospinal Fluid Biomarkers for the Diagnosis of Prodromal Alzheimer’s Disease in Amnestic Mild Cognitive Impairment
Jung Eun Park, Kyu Yeong Choi, Byeong C Kim, Seong-Min Choi, Min-Kyung Song, Jang Jae Lee, Jahae Kim, Ho-Chun Song, Hoo-Won Kim, Jung-Min Ha, Eun Hyun Seo, Woo Keun Song, Sung-Gyoo Park, Jung Sup Lee, Kun Ho Lee

https://doi.org/10.1159/000496920
Genotyping | SNaPshot assay
2019-01-07 | Psychiatry Investigation
Possible Association of the Ubiquitin-Specific Peptidase 46 Gene (USP46) with Affective Temperamental Traits in Healthy Korean Volunteers
Young Jun Boo, Chun Il Park, Hae Won Kim, Se Joo Kim, Jee In Kang

https://doi.org/10.30773%2Fpi.2018.10.02
Genotyping | SNaPshot assay
2018-12-01 | The Journal of Clinical Endocrinology & Metabolism
Genome-Wide Association Study Reveals Distinct Genetic Susceptibility of Thyroid Nodules From Thyroid Cancer
Yul Hwangbo, Eun Kyung Lee, Ho-Young Son, Sun-Wha Im, Soo-Jung Kwak, Ji Won Yoon, Min Joo Kim, Jeongseon Kim, Hoon Sung Choi, Chang Hwan Ryu, You Jin Lee, Jong-Il Kim, Nam H Cho, Young Joo Park

https://doi.org/10.1210/jc.2017-02439
Genotyping | ThermoFisher Genome-Wide Human SNP Array 5.0
2018-09-30 | Genomics & Informatics
Utility of Integrated Analysis of Pharmacogenomics and Pharmacometabolomics in Early Phase Clinical Trial: A Case Study of a New Molecular Entity
Jaeseong Oh, Sojeong Yi, Namyi Gu, Dongseong Shin, Kyung-Sang Yu, Seo Hyun Yoon, Joo-Youn Cho, In-Jin Jang

https://doi.org/10.5808%2FGI.2018.16.3.52
Genotyping | ThermoFisher DMET Plus
2018-09-23 | Nutrients
Genetic Association between Serum 25-Hydroxyvitamin D Levels and Lung Function in Korean Men and Women: Data from KNHANES 2011?2012
Clara Yongjoo Park, So-Young Kwak, Garam Jo, Min-Jeong Shin

https://doi.org/10.3390/nu10101362
Genotyping | TaqMan assay, Fluidigm assay
2018-09-06 | BMC Pediatrics
Long-term effects of the SLC2A9 G844A and SLC22A12 C246T variants on serum uric acid concentrations in children
Hye Ah Lee, Bo Hyun Park, Eun Ae Park, Su Jin Cho, Hae Soon Kim, Hyesook Park

https://doi.org/10.1186/s12887-018-1272-y
Genotyping | Taqman assay
2018-09-01 | Endocrine Journal
Association among genetic variants in the vitamin D pathway and circulating 25-hydroxyvitamin D levels in Korean adults: results from the Korea National Health and Nutrition Examination Survey 2011-2012
So-Young Kwak, Clara Yongjoo Park, Garam Jo, Oh Yoen Kim, Min-Jeong Shin

https://doi.org/10.1507/endocrj.ej18-0084
Genotyping | TaqMan assay, Fluidigm assay
2018-06-25 | Diabetes
Nonsynonymous Variants in PAX4 and GLP1R Are Associated With Type 2 Diabetes in an East Asian Population
Soo Heon Kwak, Jeesoo Chae, Seungbok Lee, Sungkyoung Choi, Bo Kyung Koo, Ji Won Yoon, Jin-Ho Park, Belong Cho, Min Kyong Moon, Soo Lim, Young Min Cho, Sanghoon Moon, Young Jin Kim, Sohee Han, Mi Yeong Hwang, Yoon Shin Cho, Myung-Shik Lee, Hak C. Jang, Hyun Min Kang, Taesung Park, Nam H. Cho, Kyunga Kim, Jong-Il Kim, Kyong Soo Park

https://doi.org/10.2337/db18-0361
Genotyping | ThermoFisher Axiom Biobank Plus Genotyping Array
2018-05-14 | Nutrients
Association of Genetic Variation in the Epithelial Sodium Channel Gene with Urinary Sodium Excretion and Blood Pressure
Yoon Jung Yang, Jihye Kim, Chang Keun Kwock

https://doi.org/10.3390/nu10050612
Genotyping | ThermoFisher Genome-Wide Human SNP Array 5.0
2018-04-01 | Soa Chongsonyon Chongsin Uihak
Genome-Wide Analysis Reveals Four Novel Loci for Attention-Deficit Hyperactivity Disorder in Korean Youths
Kukju Kweon, Eun-Soon Shin, Kee Jeong Park, Jong-Keuk Lee, Yeonho Joo, Hyo-Won Kim

https://doi.org/10.5765%2Fjkacap.2018.29.2.62
Genotyping | ThermoFisher Axiom KORV1.0-96 Array
2022-10-14 | Cancer Letters
Sorbitol dehydrogenase induction of cancer cell necroptosis and macrophage polarization in the HCC microenvironment suppresses tumor progression
Su-Yeon Lee, Sanghwa Kim, Yeonhwa Song, Namjeong Kim, Joohwan No, Kang Mo Kim, Haeng Ran Seo

https://doi.org/10.1016/j.canlet.2022.215960
Microarray, Bioinformatics | R&D Systems The Proteome Profiler Human Cytokine Array, Proteome Profiler Mouse Cytokine Array
2022-06-28 | Journal of Plant Biology
A SHORTROOT-Mediated Transcriptional Regulatory Network for Vascular Development in the Arabidopsis Shoot
Kangseok Ko, Eun Kyung Yoon, Souvik Dhar, Jiyeong Oh, Jun Lim

https://doi.org/10.1007/s12374-022-09355-4
Microarray, Bioinformatics | ThermoFisher GeneChip Arabidopsis Genome ATH1 Array
2022-02-01 | Frontiers in Cell and Developmental Biology
CD26 Inhibition Potentiates the Therapeutic Effects of Human Umbilical Cord Blood-Derived Mesenchymal Stem Cells by Delaying Cellular Senescence
Miyeon Kim, Jinyoung Go, Ji Hye Kwon, Hye Jin Jin, Yun Kyung Bae, Eun-Young Kim, Eun-Ju Chang, Soo Jin Choi, Seong Who Kim

https://doi.org/10.3389/fcell.2021.803645
Microarray | ThermoFisher Human gene 2.0 Array Chip X
2022-01-20 | Molecules and Cells
SHORT-ROOT Controls Cell Elongation in the Etiolated Arabidopsis Hypocotyl
Souvik Dhar, Jinkwon Kim, Eun Kyung Yoon, Sejeong Jang, Kangseok Ko, Jun Lim

https://doi.org/10.14348%2Fmolcells.2021.5008
Microarray, Sequencing | ThermoFisher GeneChip Arabidopsis Genome ATH1 Array, Library prep, Illumina HiSeq2500
2021-10-09 | Cells
Enhanced Expression of microRNA-1273g-3p Contributes to Alzheimer’s Disease Pathogenesis by Regulating the Expression of Mitochondrial Genes
So Hee Kim, Kyu Yeong Choi, Yega Park, Catriona McLean, Jiyu Park, Jung Hoon Lee, Kyung-Hwa Lee, Byeong C. Kim, Yun Hyun Huh, Kun Ho Lee, Woo Keun Song

https://doi.org/10.3390/cells10102697
Microarray, Sequencing | ThermoFisher GeneChip miRNA 4.0 Array, Library prep, Illumina HiSeq2500
2021-04-27 | Scientific Reports
Human WRN is an intrinsic inhibitor of progerin, abnormal splicing product of lamin A
So-mi Kang, Min-Ho Yoon, Su-Jin Lee, Jinsook Ahn, Sang Ah Yi, Ki Hong Nam, Soyoung Park, Tae-Gyun Woo, Jung-Hyun Cho, Jaecheol Lee, Nam-Chul Ha, Bum-Joon Park

https://doi.org/10.1038/s41598-021-88325-1
Microarray | ThermoFisher GeneChip Human Gene 1.0 ST Array
2021-03-08 | Cancers
Tumor Suppressor miR-584-5p Inhibits Migration and Invasion in Smoking Related Non-Small Cell Lung Cancer Cells by Targeting YKT6
Saet Byeol Lee, Young Soo Park, Jae Sook Sung, Jong Won Lee, Boyeon Kim, Yeul Hong Kim

https://doi.org/10.3390/cancers13051159
Microarray | ThermoFisher GeneChip miRNA 4.0 Array
2021-03-04 | Cell Biology and Toxicology
Withaferin A mitigates metastatic traits in human oral squamous cell carcinoma caused by aberrant claudin-1 expression
Ji-Ae Shin, Lee-Han Kim, Mi Heon Ryu, So-Young Choi, Bohwan Jin, WonWoo Lee, Yun Chan Jung, Chi-Hyun Ahn, Min-Hye Ahn, Kyoung-Ok Hong, Neeti Swarup, Kunal Chawla, Se Chan Kang, Seong Doo Hong, Sung-Dae Cho

https://doi.org/10.1007/s10565-021-09584-2
Microarray | ThermoFisher GeneChip Human Gene 2.0 ST Array
2021-03-01 | International Journal of Molecular Medicine
Descriptive and functional characterization of epidermal growth factor?like domain 8 in mouse cortical thymic epithelial cells by integrated analysis of gene expression signatures and networks
Ye Seon Lim, Do-Young Lee, Hye-Yoon Kim, Yejin Ok, Seonyeong Hwang, Yuseok Moon, Sik Yoon

https://doi.org/10.3892/ijmm.2020.4837
Microarray | ThermoFisher GeneChip Mouse Gene 1.0 ST Array
2020-10-30 | EMBO Molecular Medicine
SATB2 drives glioblastoma growth by recruiting CBP to promote FOXM1 expression in glioma stem cells
Weiwei Tao, Aili Zhang, Kui Zhai, Zhi Huang, Haidong Huang, Wenchao Zhou, Qian Huang, Xiaoguang Fang, Briana C Prager, Xiuxing Wang, Qiulian Wu, Andrew E Sloan, Manmeet S Ahluwalia, Justin D Lathia, Jennifer S Yu, Jeremy N Rich, Shideng Bao

https://doi.org/10.15252/emmm.202012291
Microarray | ThermoFisher GeneChip Human Gene 2.0 ST Array
2020-07-03 | Agronomy
Transcriptional Modulation of Resistance against Xanthomonas oryzae pv. oryzae Korean Race K2 in japonica Rice
Marjohn C. Nino, Yong-Gu Cho

https://doi.org/10.3390/agronomy10070960
Microarray | ThermoFisher GeneChip Rice Genome Array
2020-01-01 | Toxicology and Applied Pharmacology
CXCL14 downregulation in human keratinocytes is a potential biomarker for a novel in vitro skin sensitization test
Eunyoung Lee, Sungjin Ahn, Sun Hee Jin, Moonyoung Lee, Jeong Joo Pyo, Jeayoung C. Shin, Seungchan An, Jaehyoun Ha, Minsoo Noh

https://doi.org/10.1016/j.taap.2019.114828
Microarray | ThermoFisher Human Genome U133 2.0 GeneChip array
2019-08-16 | Journal of Clinical Medicine
APOE Promoter Polymorphism-219T/G is an Effect Modifier of the Influence of APOE ε4 on Alzheimer’s Disease Risk in a Multiracial Sample
Kyu Yeong Choi, Jang Jae Lee, Tamil Iniyan Gunasekaran, Sarang Kang, Wooje Lee, Jangho Jeong, Ho Jae Lim, Xiaoling Zhang, Congcong Zhu, So-Yoon Won, Yu Yong Choi, Eun Hyun Seo, Seok Cheol Lee, Jungsoo Gim, Ji Yeon Chung, Ari Chong, Min Soo Byun, Sujin Seo, Pan-Woo Ko, Ji-Won Han, Catriona McLean, John Farrell, Kathryn L Lunetta, Akinori Miyashita, Norikazu Hara, Sungho Won, Seong-Min Choi, Jung-Min Ha, Jee Hyang Jeong, Ryozo Kuwano, Min Kyung Song, Seong Soo A An, Young Min Lee, Kyung Won Park, Ho-Won Lee, Seong Hye Choi, Sangmyung Rhee, Woo Keun Song, Jung Sup Lee, Richard Mayeux, Jonathan L Haines, Margaret A Pericak-Vance, I L Han Choo, Kwangsik Nho, Ki-Woong Kim, Dong Young Lee, SangYun Kim, Byeong C Kim, Hoowon Kim, Gyungah R Jun, Gerard D Schellenberg, Takeshi Ikeuchi, Lindsay A Farrer, Kun Ho Lee, Alzheimer's Disease Neuroimaging Initative

https://doi.org/10.3390/jcm8081236
Microarray | ThermoFisher Axiom KORV1.1-96 Array
2019-05-14 | Scientific Reports
Genome-wide association study of right-sided colonic diverticulosis in a Korean population
Eun Kyung Choe, Jong-Eun Lee, Su Jin Chung, Sun Young Yang, Young Sun Kim, Eun-Soon Shin, Seung Ho Choi, Jung Ho Bae

https://doi.org/10.1038/s41598-019-43692-8
Microarray | ThermoFisher Axiom KORV1.1-96 Array
2019-03-27 | Cellular Oncology
ABT-263 exhibits apoptosis-inducing potential in oral cancer cells by targeting C/EBP-homologous protein
In-Hyoung Yang, Ji-Youn Jung, Sung-Hyun Kim, Eun-Seon Yoo, Nam-Pyo Cho, Hakmo Lee, Jeong-Yeon Lee, Seong Doo Hong, Ji-Ae Shin, Sung-Dae Cho

https://doi.org/10.1007/s13402-019-00431-5
Microarray | ThermoFisher GeneChip Human Gene 2.0 ST Array
2019-01-08 | Biochemical and Biophysical Research Communications
Integrative lipidomic and transcriptomic analysis of X-linked adrenoleukodystrophy reveals distinct lipidome signatures between adrenomyeloneuropathy and childhood cerebral adrenoleukodystrophy
Dong-Kyu Lee, Nguyen Phuoc Long, Juwon Jung, Tae Joon Kim, Euiyeon Na, Yun Pyo Kang, Sung Won Kwon, Jiho Jang

https://doi.org/10.1016/j.bbrc.2018.11.123
Microarray | ThermoFisher GeneChip HT HG-U133+PM Array
2019-01-07 | Nutrients
Synergistic Effects of Sanghuang?Danshen Bioactives on Arterial Stiffness in a Randomized Clinical Trial of Healthy Smokers: An Integrative Approach to in silico Network Analysis
Yeni Lim, Tae-Jin Song, Woochang Hwang, Ji Yeon Kim, Doheon Lee, Yong-Jae Kim, Oran Kwon

https://doi.org/10.3390/nu11010108
Microarray | ThermoFisher GeneChip Human Gene 2.0 ST Array
2018-12-01 | Genomics & Informatics
Metabolic Syndrome Prediction Using Machine Learning Models with Genetic and Clinical Information from a Nonobese Healthy Population
Eun Kyung Choe, Hwanseok Rhee, Seungjae Lee, Eunsoon Shin, Seung-Won Oh, Jong-Eun Lee, Seung Ho Choi

https://doi.org/10.5808%2FGI.2018.16.4.e31
Microarray | ThermoFisher Axiom KORV1.1-96 Array
2018-11-02 | Molecular Cancer Therapeutics
Loss of NF2 Induces TGFβ Receptor 1?mediated Noncanonical and Oncogenic TGFβ Signaling: Implication of the Therapeutic Effect of TGFβ Receptor 1 Inhibitor on NF2 Syndrome
Jung-Hyun Cho, Ah-Young Oh, Soyoung Park, So-mi Kang, Min-Ho Yoon, Tae-Gyun Woo, Shin-Deok Hong, Jihwan Hwang, Nam-Chul Ha, Ho-Young Lee, Bum-Joon Park

https://doi.org/10.1158/1535-7163.MCT-17-1210
Microarray, Bioinformatics | ThermoFisher GeneChip Human Gene 2.0 ST Array
2018-08-08 | Journal of Clinical Medicine
Genetic Polymorphisms Associated with the Neutrophil?Lymphocyte Ratio and Their Clinical Implications for Metabolic Risk Factors
Boram Park, Eun Kyung Choe, Hae Yeon Kang, Eunsoon Shin, Sangwoo Lee, Sungho Won

https://doi.org/10.3390/jcm7080204
Microarray | ThermoFisher Axiom KORV1.1-96 Array
2018-04-04 | International Journal of Radiation Biology
Gene expression profiling of rat livers after continuous whole-body exposure to low-dose rate of gamma rays
Kim Ngan Tran, Jong-il Choi

https://doi.org/10.1080/09553002.2018.1455009
Microarray | ThermoFisher GeneChip Rat Gene 1.0 ST Array
2018-04-01 | Journal of Nanoscience and Nanotechnology
Alteration of MicroRNA Expression Profiles by Surface-Modified Gold Nanoparticles in Human Lung Adenocarcinoma Cells
Seon Young Choi, Pan Dong Ryu, Sang-Woo Joo, So Yeong Lee

https://doi.org/10.1166/jnn.2018.14395
Microarray | ThermoFisher GeneChip miRNA 2.0 array
2018-02-22 | Cell Death & Differentiation
Oncogene-induced senescence mediated by c-Myc requires USP10 dependent deubiquitination and stabilization of p14ARF
Aram Ko, Su Yeon Han, Chel Hun Choi, Hanbyoul Cho, Min-Sik Lee, Soo-Youl Kim, Joon Seon Song, Kyeong-Man Hong, Han-Woong Lee, Stephen M. Hewitt, Joon-Yong Chung, Jaewhan Song

https://doi.org/10.1038/s41418-018-0072-0
Microarray | ThermoFisher GeneChip Human Gene 2.0 ST Array
2022-08-29 | Preprints
Paving the Way for Gene Silencing in Lepidoptera: Integrated Sequencing Data Unveil the Rnai Core Machinery of Leucoptera Coffeella.
Martins N, Nascimento E, Vidal L, Lucena-Leandro V, Junqueira C, Soares F, Viana M, Nobrega P, Fontes W, Luz I, Mehta A, Romano E, Clarindo W, Dantas J, Togawa R, Albuquerque E

https://doi.org/10.20944/preprints202208.0465.v1
Sequencing | Library prep, PacBio RS II, Illumina NovaSeq6000
2022-01-01 | Theranostics
Mammalian Ssu72 phosphatase preferentially considers tissue-specific actively transcribed gene expression by regulating RNA Pol II transcription
Hyun-Soo Kim, Yoon Jeon, Yoon Ok Jang, Ho Lee, Yong Shin, Chang-Woo Lee

https://doi.org/10.7150%2Fthno.62274
Bioinformatics
2020-12-31 | Journal of the Korean Applied Science and Technology (한국응용과학기술학회지)
Characterization of soil, vegetation, and soil fungal community in Cheongsu Gotjawal Forest
Jong-Shik Kim, Dae-Shin Kim

https://doi.org/10.12925/jkocs.2020.37.6.1489
Bioinformatics
2020-06-30 | Genes
Transcriptomic Analysis of Gill and Kidney from Asian Seabass (Lates calcarifer) Acclimated to Different Salinities Reveals Pathways Involved with Euryhalinity
Shubha Vij, Kathiresan Purushothaman, Prakki Sai Rama Sridatta, Dean R. Jerry

https://doi.org/10.3390/genes11070733
Bioinformatics
2018-08-15 | Molecules
Therapeutic effects of Hypoxia-Inducible Factor-1α (HIF-1α) on bone formation around implants in diabetic mice
Sang-Min Oh, Jin-Su Shin, Il-Koo Kim, Jae-Seung Moon, Jung-Ho Kim, Sang-Kyou Lee, Jae-Hoon Lee

https://doi.org/10.3390%2Fmolecules24040760
Sequencing | Library prep, Illumina NextSeq500
2018-08-01 | Translational Oncology
Molecular Characterization and Putative Pathogenic Pathways of Tuberous Sclerosis Complex?Associated Renal Cell Carcinoma
Jeong Hwan Park, Cheol Lee, Mee Soo Chang, Kwang soo Kim, Seong min Choi, Hyun jung Lee, Hyun-Seob Lee, Kyung Chul Moon

https://doi.org/10.1016/j.tranon.2018.05.010
Bioinformatics
2022-01-13 | Biomedicines
Diagnostic Blood Biomarkers in Alzheimer''s Disease
Jung Eun Park, Tamil Iniyan Gunasekaran, Yeong Hee Cho, Seong-Min Choi, Min-Kyung Song, Soo Hyun Cho, Jahae Kim, Ho-Chun Song, Kyu Yeong Choi, Jang Jae Lee, Zee-Yong Park, Woo Keun Song, Han-Seong Jeong, Kun Ho Lee, Jung Sup Lee, Byeong C. Kim

https://doi.org/10.3390/biomedicines10010169
Proteomics | SIMOA NF-light, Abeta 42
2021-09-21 | Research Square
Diagnostic Fluid Biomarkers in Alzheimer''s Disease: Blood and Cerebrospinal Fluid
Jung Eun Park, Tamil Iniyan Gunasekaran, Yeong Hee Cho, Seong-Min Choi, Min-Kyung Song, Soo Hyun Cho, Jahae Kim, Ho-Chun Song, Kyu Yeong Choi, Jang Jae Lee, Zee-Yong Park, Woo Keun Song, Han-Seong Jeong, Kun Ho Lee, Jung Sup Lee, Byeong C. Kim

https://doi.org/10.21203/rs.3.rs-763031/v2
Proteomics | SIMOA NF-light, Abeta 42
2021-06-22 | Scientific Reports
The relationship of soluble TREM2 to other biomarkers of sporadic Alzheimer’s disease
So-Hee Park, Eun-Hye Lee, Hyung-Ji Kim, Sungyang Jo, Sunju Lee, Sang Won Seo, Hyun-Hee Park, Seong-Ho Koh, Jae-Hong Lee

https://doi.org/10.1038/s41598-021-92101-6
Proteomics | SIMOA NF-light
2022-02-25 | Proceedings of the National Academy of Sciences (PNAS)
Precision targeting tumor cells using cancer-specific InDel mutations with CRISPR-Cas9
Taejoon Kwon, Jae Sun Ra, Soyoung Lee, In-Joon Baek, Keon Woo Khim, Eun A Lee, Eun Kyung Song, Daniyar Otarbayev, Woojae Jung, Yong Hwan Park, Minwoo Wie, Juyoung Bae, Himchan Cheng, Jun Hong Park, Namwoo Kim, Yuri Seo, Seongmin Yun, Ha Eun Kim, Hyo Eun Moon, Sun Ha Paek, Tae Joo Park, Young Un Park, Hwanseok Rhee, Jang Hyun Choi, Seung Woo Cho, Kyungjae Myung

https://doi.org/10.1073/pnas.2103532119
PDX
2022-01-05 | iScience
Interleukin-34 Limits the Therapeutic Effects of Immune Checkpoint Blockade
Naoki Hama,?Takuto Kobayashi,?Nanumi Han,?Fumihito Kitagawa,?Nabeel Kajihara,?Ryo Otsuka,?Haruka Wada,?Hee-kyung Lee,?Hwanseok Rhee,?Yoshinori Hasegawa,?Hideo Yagita,?Muhammad Baghdadi, Ken-ichiro Seino

https://doi.org/10.1016/j.isci.2020.101584
PDX
2021-06-18 | STAR Protocols
An optimized protocol for patient-derived xenograft in humanized mice to evaluate the role of IL-34 in immunotherapeutic resistance
Nanumi Han, Hye Yoon Jang, Naoki Hama, Takuto Kobayashi, Ryo Otsuka, Haruka Wada, Ken-ichiro Seino

https://doi.org/10.1016/j.xpro.2021.100460
PDX
2019-02-01 | Translational Oncology
Establishment of a Novel PDX Mouse Model and Evaluation of the Tumor Suppression Efficacy of Bortezomib Against Liposarcoma
Eun Byeol Jo, Doopyo Hong, Young Sang Lee, Hyunjoo Lee, Jae Berm Park, Sung Joo Kim

https://doi.org/10.1016/j.tranon.2018.09.015
PDX | Liposarcoma
2020-07-01 | Forensic Science International: Genetics
Large-scale identification of human bone remains via SNP microarray analysis with reference SNP database
Sohee Cho, Moon-Young Kim, Ji Hyun Lee, Hwan Young Lee, Soong Deok Lee

https://doi.org/10.1016/j.fsigen.2020.102293
Forensic Science | AccuID®
2019-02-11 | Legal Medicine
Abnormal detection of Y-STR alleles at DYS385 from female DNA in forensic casework and interchromosomal insertional translocation of P4 palindrome (HSFY/DYS385) from AZFb region
Soon Hee Kim, Jin Myeong Lee, Young Se Hyun, Dong Ho Choi

https://doi.org/10.1016/j.legalmed.2019.02.002
Forensic Science | AccuID®
2021-01-21 | Journal of Clinical Microbiology
Evaluation of Serological SARS-CoV-2 Lateral Flow Assays for Rapid Point-of-Care Testing
Steven E. Conklin, Kathryn Martin, Yukari C. Manabe, Haley A. Schmidt, Jernelle Miller, Morgan Keruly, Ethan Klock, Charles S. Kirby, Owen R. Baker, Reinaldo E. Fernandez, Yolanda J. Eby, Justin Hardick, Kathryn Shaw-Saliba, Richard E. Rothman, Patrizio P. Caturegli, Andrew D. Redd, Aaron A. R. Tobian, Evan M. Bloch, H. Benjamin Larman, Thomas C. Quinn, William Clarke, Oliver Laeyendecker

https://doi.org/10.1128/JCM.02020-20
Covid-19 | AccuFind
2020-07-06 | Clinical Epigenetics
Reduced DNA methylation of the oxytocin receptor gene is associated with obsessive-compulsive disorder
Chun Il Park, Hae Won Kim, Sumoa Jeon, Jee In Kang, Se Joo Kim

https://doi.org/10.1186/s13148-020-00890-w
Sample prep.
2018-11-17 | Hereditas
De novo transcriptome assembly of brackish water flea Diaphanosoma celebensis based on short-term cadmium and benzo[a]pyrene exposure experiments
Bo-Mi Kim, Seunghyun Kang, Ryeo-Ok Kim, Jee-Hyun Jung, Kyun-Woo Lee, Jae-Sung Rhee, Young-Mi Lee

https://doi.org/10.1186/s41065-018-0075-3
Sequencing | Library prep, Illumina HiSeq2500