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Total 571 publications
2023-06-08 | Marine Genomics
Complete genome sequence of Halomonas alkaliantarctica MSP3 isolated from marine sediment, Jeju Island
Minji Kim, Soo-Je Park

https://doi.org/10.1016/j.margen.2023.101046
Sequencing | PacBio
2023-06-06 | Research Square
Concordance and deviations of the PDX tumors from the primary tumors of NSCLC patients: effects of murine fibroblasts on low engraftment rates
Jinseon Lee, Chae Hwa Seo, Bo Kyung Kim, Jung Hee Lee, Jung Hee Kang, Sung-Hyun Kim, Minseob Cho, Hong Kwan Kim, Jong Ho Cho, Yong Soo Choi, Sumin Shin, Young-Ae Choi, Hyun Kuk Song, Min Young Park, Hye Yoon Jang, Sanghyuk Lee, Dae-Soon Son, Jong-Eun Lee, Jhingook Kim

https://doi.org/10.21203/rs.3.rs-2930778/v1
Sequencing, Bioinformatics, PDX, Author | Illumina, NSCLC
2023-05-25 | Antonie van Leeuwenhoek
Description of Brachybacterium sillae sp. nov., a thermophilic bacterium isolated from a hot spring
Dariimaa Ganbat, DoKyung Oh, Yong-Jik Lee, Dong-Woo Lee, Seong-Bo Kim, Won-Jae Chi, Ki-Eun Lee, Byoung-Hee Lee, You-Jung Jung, Jung-Sook Lee, Sang-Jae Lee

https://doi.org/10.1007/s10482-023-01842-z
Sequencing | PacBio
2023-05-22 | Antimicrobial Agents and Chemotherapy
DS86760016, a Leucyl-tRNA Synthetase Inhibitor, Is Active against Mycobacterium abscessus
Thanh Quang Nguyen, Bo Eun Heo, Bui Thi Bich Hanh, Seunghyeon Jeon, Yujin Park, Arunima Choudhary, Sujin Lee, Tae Ho Kim, Cheol Moon, Sun-Joon Min, Jichan Jang

https://doi.org/10.1128/aac.01567-22
Sequencing | Illumina
2023-05-12 | Chemico-Biological Interactions
Induced pluripotent stem cells-podocytes promote repair in acute kidney injury is dependent on Mafb/CCR5/Nampt axis-mediated M2 macrophage polarization
Chang Liu, Qingli Cheng, Qiangguo Ao, Guang Yang, Yang Liu, Jiahui Zhao

https://doi.org/10.1016/j.cbi.2023.110534
Sequencing | Illumina
2023-05-04 | Brain Structure and Function
Brain compartmentalization based on transcriptome analyses and its gene expression in Octopus minor
Chan-Jun Lee, Hae-Youn Lee, Yun-Sang Yu, Kyoung-Bin Ryu, Hyerim Lee, Kyunghwan Kim, Song Yub Shin, Young-Chun Gil, Sung-Jin Cho

https://doi.org/10.1007/s00429-023-02647-6
Sequencing, Bioinformatics | Illumina
2023-05-03 | Microbiology Resource Announcements
Draft Genome Sequence for the Symbiotic Pine Mushroom Tricholoma matsutake
Min-Jeong Kang, Eun-Kyung Bae, Eung-Jun Park, Kang-Hyeon Ka, Mi-Ra Son, Ki-Tae Kim, Jei-Wan Lee

https://doi.org/10.1128/mra.01271-22
Sequencing | PacBio, Illumina
2023-05-02 | Research Square
Identification of novel candidate genes associated with non-syndromic tooth agenesis in Mongolian families
Dejidnorov Semjid, Hyunsoo Ahn, Sapaar Bayarsaikhan, Munkhjargal Gantumur, Sanguk Kim, Jae Hoon Lee

https://doi.org/10.21203/rs.3.rs-2867602/v1
Sequencing | Illumina
2023-04-29 | Authorea
Differential contribution of two [Fe-Ni] hydrogenases to Proteus mirabilis fitness during single-species and polymicrobial catheterized urinary tract infection
Chelsie Armbruster, Aimee Brauer,Brian Learman

https://doi.org/10.22541/au.168278769.90950099/v1
Sequencing | PacBio
2023-04-28 | Blood Advances
Genetically defined individual reference ranges for tryptase limit unnecessary procedures and unmask myeloid neoplasms
Chovanec J, Tunc I, Hughes J, et al.

https://doi.org/10.1182/bloodadvances.2022007936
Sequencing | PacBio
2023-04-25 | Chemical Engineering Journal
Electroconductive and mechano-competent PUCL@CNT nanohybrid scaffolds guiding neuronal specification of neural stem/progenitor cells
Yu-Meng Li, Kapil D. Patel, Yoon-Koo Han, Suk-Min Hong, Yu-Xuan Meng, Hae-Hyoung Lee, Jeong Hui Park, Jonathan C. Knowles, Jung Keun Hyun, Jung-Hwan Lee

https://doi.org/10.1016/j.cej.2023.143125
Sequencing | Illumina
2023-04-24 | Mobile DNA
Analysis of antibiotic resistance gene cassettes in a newly identified Salmonella enterica serovar Gallinarum strain in Korea
Thanh Quang Tran, Minyoung Park, Jong Eun Lee, Soo Hyun Kim, Jae-Ho Jeong, Hyon E. Choy

https://doi.org/10.1186/s13100-023-00292-8
Sequencing, Bioinformatics | PacBio
2023-04-19 | Archives of Microbiology
Rheinheimera faecalis sp. nov., isolated from Ceratotherium simum feces
Yerim Park, Minkyung Kim, Yeji Cha, Woojun Park

https://doi.org/10.1007/s00203-023-03548-2
Sequencing, Bioinformatics | Illumina
2023-04-03 | Integrative Medicine Research
Frankincense ameliorates endometriosis via inducing apoptosis and reducing adhesion
Min Kyoung Cho, Jung-Sook Jin, Yunju Jo, Jung Ho Han, Su Shin, Sung-Jin Bae, Dongryeol Ryu, Jongkil Joo, Jang-Kyung Park, Ki-Tae Ha

https://doi.org/10.1016/j.imr.2023.100947
Sequencing | Illumina
2023-04-01 | bioRxiv
A rapid alkalinization factor-like peptide EaF82 impairs tapetum degeneration during pollen development through induced ATP deficiency
Chiu-Yueh Hung, Farooqahmed S. Kittur, Keely N. Wharton, Makendra L. Umstead, D’Shawna B. Burwell, Martinique Thomas, Qi Qi, Jianhui Zhang, Carla E. Oldham, Kent O. Burkey, Jianjun Chen, View ORCID ProfileJiahua Xie

https://doi.org/10.1101/2022.08.11.503650
Sequencing | Illumina
2023-03-30 | Fishes
Antimicrobial Activity of Identified Ubiquitin-40S Ribosomal Protein S27a (RPS27A), Ubiquitin-like Protein Fubi, and Ribosomal Protein (S30FAU) in the Starry Flounder (Platichthys stellatus)
Ha-Jeong Son, Gyoungsik Kang, Won-Sik Woo, Kyung-Ho Kim, Min-Young Sohn, Jong-Won Park, Dain Lee, Chan-Il Park

https://doi.org/10.3390/fishes8040187
Sequencing, Bioinformatics | Illumina
2023-03-24 | PLOS Neglected Tropical Diseases
A genome sequence for Biomphalaria pfeifferi, the major vector snail for the human-infecting parasite Schistosoma mansoni
Lijing Bu, Lijun Lu, Martina R. Laidemitt, Si-Ming Zhang, Martin Mutuku, Gerald Mkoji, Michelle Steinauer, Eric S. Loker

https://doi.org/10.1371/journal.pntd.0011208
Sequencing | PacBio
2023-03-23 | PLOS ONE
Telomerase RNA plays a major role in the completion of the life cycle in Ustilago maydis and shares conserved domains with other Ustilaginales
Juan Antonio Sanpedro-Luna, Jose Juan Jacinto-Vazquez, Estela Anastacio-Marcelino, Carmen Maria Posadas-Gutierrez, Ivan Olmos-Pineda, Jesus Antonio Gonzalez-Bernal, Moises Carcano-Montiel, Leticia Vega-Alvarado, Candelario Vazquez-Cruz, Patricia Sanchez-Alonso

https://doi.org/10.1371/journal.pone.0281251
Sequencing | Illumina
2023-03-09 | Jilin Daxue Xuebao (Gongxueban)/Journal of Jilin University (Engineering and Technology Edition)
ENDOGENOUS PARARETROVIRUSES IN THE GENOME OF CUCUMBER ARE SILENT AND INVOLVED WITHIN PLANT GENES
HAWRAA ALYASIRY, OSAMAH NADHIM ALISAWI, FADHL ALFADHL

https://doi.org/10.17605/OSF.IO/9P4QD
Sample preparation, Sequencing | Illumina
2023-03-06 | bioRxiv
The genome of the toxic invasive species Heracleum sosnowskyi carries an increased number of genes despite absence of recent whole-genome duplications
MI Schelkunov, VYu Shtratnikova, AV Klepikova, MS Makarenko, DO Omelchenko, LA Novikova, EN Obukhova, VP Bogdanov, AA Penin, MD Logacheva

https://doi.org/10.1101/2023.02.14.528432
Sequencing | PacBio
2023-03-06 | Microbiology Spectrum
A Rapid Method for Generating Infectious SARS-CoV-2 and Variants Using Mutagenesis and Circular Polymerase Extension Cloning
Beom Kyu Kim, Won-Suk Choi, Ju Hwan Jeong, Sol Oh, Ji-Hyun Park, Yu Soo Yun, Seong Cheol Min, Da Hyeon Kang, Eung-Gook Kim, Hojin Ryu, Hye Kwon Kim, Yun Hee Baek, Young Ki Choi, Min-Suk Song

https://doi.org/10.1128/spectrum.03385-22
Sequencing | PacBio
2023-03-01 | PLOS ONE
Transcriptome profiling for developmental stages Protaetia brevitarsis seulensis with focus on wing development and metamorphosis
Jihye Hwang,Eun Hwa Choi,Bia Park,Gyeongmin Kim,Chorong Shin,Joon Ha Lee,Jae Sam Hwang,Ui Wook Hwang

https://doi.org/10.1371/journal.pone.0277815
Sequencing | Illumina
2023-02-28 | Plants
New Low Morphine Opium Poppy Genotype Obtained by TILLING Approach
Jiri Cerven, Viktor Vrbovsky, Jiri Horacek, Martin Bartas, Lenka Endlova, Petr Pecinka, Vladislav Curn

https://doi.org/10.3390/plants12051077
Sequencing | PacBio
2023-02-27 | Nature Communications
Phenotypic characterization of single CD4+ T cells harboring genetically intact and inducible HIV genomes
Caroline Dufour, Corentin Richard, Marion Pardons, Marta Massanella, Antoine Ackaoui, Ben Murrell, Bertrand Routy, Rejean Thomas, Jean-Pierre Routy, Remi Fromentin, Nicolas Chomont

https://doi.org/10.1038/s41467-023-36772-x
Sequencing | PacBio
2023-02-03 | Cells
Lens Epithelial Explants Treated with Vitreous Humor Undergo Alterations in Chromatin Landscape with Concurrent Activation of Genes Associated with Fiber Cell Differentiation and Innate Immune Response
Anil Upreti, Stephanie L. Padula, Jared A. Tangeman, Brad D. Wagner, Michael J. O’Connell, Tycho J. Jaquish, Raye K. Palko, Courtney J. Mantz, Deepti Anand, Frank J. Lovicu, Salil A. Lachke, Michael L. Robinson

https://doi.org/10.3390/cells12030501
Sequencing | Illumina
2023-02-02 | medRxiv
Wilms tumor mutational subclasses converge to drive CCND2 overexpression
Lin Xu, Kavita Desai, Jiwoong Kim, Qinbo Zhou, Lei Guo, Xue Xiao, Yanfeng Zhang, Li Zhou, Aysen Yuksel, Daniel R. Catchpoole, James F. Amatruda, Kenneth S. Chen

https://doi.org/10.1101/2023.01.30.23285117
Sequencing | Illumina
2023-02-01 | Microbiology Resource Announcements
Coding-Complete Sequence of Cowpea Mild Mottle Virus Isolated from Iraq
Ahmed Kareem, Osamah Alisawi, Fadhl Al Fadhl

https://doi.org/10.1128/mra.01224-22
Sequencing | Illumina
2023-02-01 | Journal of Microbiology
Chryseobacterium paludis sp. nov. and Chryseobacterium foetidum sp. nov. Isolated from the Aquatic Environment, South Korea
Miryung Kim, Yong-Seok Kim, Chang-Jun Cha

https://doi.org/10.1007/s12275-022-00008-2
Sequencing | Illumina
2023-01-24 | Mitochondrial DNA Part B
Complete mitochondrial genome of Aleochara (Aleochara) curtula (Goeze, 1777) (Coleoptera: Staphylinidae)
Chan-Jun Lee, Ji-Wook Kim, Jeesoo Yi, Yeon-Jae Choi, Sangil Kim, Mi-Jeong Jeon, Jong-Seok Park, Sung-Jin Cho

https://doi.org/10.1080/23802359.2023.2167472
Sequencing | Illumina
2023-01-18 | Microbiology Resource Announcements
Genome Sequences of Metabacillus sp. Strain B2-18, Isolated from Human Skin, and Metabacillus endolithicus KCTC 33579T
Haelim Son, Kyoung Lee

https://doi.org/10.1128/mra.01348-22
Sequencing | Illumina
2023-01-16 | Proceedings of the National Institute of Ecology of the Republic of Korea
Complete Mitochondrial Genome and Phylogenetic Analysis for the Korean Field Mouse Apodemus peninsulae Found on Baengnyeong Island in South Korea
Jung A Kim, Hye Sook Jeon, Seung Min Lee, Hong Seomun, Junghwa An

https://doi.org/10.22920/PNIE.2023.4.2.69
Sequencing | Illumina
2023-01-11 | Journal of Hazardous Materials
Influence of DNA From Non-viable Sources on the Riverine Water and Biofilm Microbiome, Resistome, Mobilome, and Resistance Gene Host Assignments
A.S. Deshpande, N.L. Fahrenfeld

https://doi.org/10.1016/j.jhazmat.2023.130743
Sequencing | Illumina
2023-01-05 | Current Microbiology
Caproiciproducens faecalis sp. nov., Isolated from Cow Faeces
Ji Young Choi, Gyeongbin Cho, Jam-Eon Park, Seung-Hyeon Choi, Ji-Sun Kim, Jiyoung Lee, Mi-Kyung Lee, Jung-Sook Lee, Ju Huck Lee, Hyeun Bum Kim, Ju-Hoon Lee, Jae-Kyung Kim, Se Won Kang, Seung-Hwan Park

https://doi.org/10.1007/s00284-022-03169-w
Sequencing | Illumina
2022-12-25 | bioRxiv
Haploid-resolved and chromosome-scale genome assembly in hexa-autoploid sweetpotato (Ipomoea batatas (L.) Lam)
Ung-Han Yoon, Qinghe Cao, Kenta Shirasawa, Hong Zhai, Tae-Ho Lee, Masaru Tanaka, Hideki Hirakawa, Jang-Ho Hahn, Xiangfeng Wang, Ho Soo Kim, Hiroaki Tabuchi, An Zhang, Tae-Ho Kim, Hideki Nagasaki, Shizhuo Xiao, Yoshihiro Okada, Jae Cheol Jeong, Soichiro Nagano, Younhee Shin, Hyeong-Un Lee, Sul-U Park, Seung Jae Lee, Keunpyo Lee, Jung-Wook Yang, Byoung Ohg Ahn, Daifu Ma, Yasuhiro Takahata, Sang-Soo Kwak, Qingchang Liu, Sachiko Isobe

https://doi.org/10.1101/2022.12.25.521700
Sequencing, Author | PacBio, Illumina
2022-12-20 | Journal of Animal Science and Technology
Complete genome sequence of probiotic Lactobacillus johnsonii 7409N31 isolated from a healthy Hanwoo calf
Young Joon Oh, Jieun Lee, Seul Ki Lim, Min-Sung Kwon, Sulhee Lee, Sang-Pil Choi, Dohyeon Yu, Yeon-su Oh, Jinho Park, Hak-Jong Choi

https://doi.org/10.5187/jast.2022.e98
Sequencing | PacBio
2022-12-13 | Archives of Microbiology
Description of Microbacterium neungamense sp. nov. isolated from a hot spring
Dariimaa Ganbat, Ga Eul Jeong, DoKyung Oh, Dong-Woo Lee, Yong-Jik Lee, Seong-Bo Kim, In-Tae Cha, Won-Jae Chi, Seul-Ki Park, Jung-Sook Lee, Sang-Jae Lee

https://doi.org/10.1007/s00203-022-03343-5
Sequencing | PacBio
2022-12-09 | Fish & Shellfish Immunology
Expression profile and molecular function of beclin-1 in Epinephelus akaara in response to immune stimuli and oxidative stress
Kishanthini Nadarajapillai, H.M.V. Udayantha, Sarithaa Sellaththurai, T.D.W. Kasthuriarachchi, Gaeun Kim, Jehee Lee

https://doi.org/10.1016/j.fsi.2022.108490
Sequencing | Illumina
2022-11-29 | Experimental & Molecular Medicine
Pim1 promotes IFN-β production by interacting with IRF3
Ryeojin Ko, Jeongin Seo, Hana Park, Nawon Lee, Soo Young Lee

https://doi.org/10.1038/s12276-022-00893-y
Sequencing | Illumina
2022-11-25 | Fish & Shellfish Immunology
Thioredoxin domain-containing protein 12 (TXNDC12) in red spotted grouper (Epinephelus akaara): Molecular characteristics, disulfide reductase activities, and immune responses
H.A.C.R. Hanchapola, D.S. Liyanage, W.K.M. Omeka, Chaehyeon Lim, Gaeun Kim, Taehyug Jeong, Jehee Lee

https://doi.org/10.1016/j.fsi.2022.11.037
Sequencing | Illumina
2022-11-23 | PLOS ONE
Throughput screening of Bacillus subtilis strains that abundantly secrete surfactin in vitro identifies effective probiotic candidates
Dongho Lee, Taehoon Oh, Bongseok Kang, Jong Seok Ahn, Yangrae Cho

https://doi.org/10.1371/journal.pone.0277412
Sequencing | PacBio
2022-11-12 | Genetic Resources and Crop Evolution
Population structure of sumac (Rhus coriaria L.) from Turkiye based on transcriptome-developed SSR marker
ilyas Kılıncer, Lungelo Khanyile, Kahraman Gurcan

https://doi.org/10.1007/s10722-022-01497-1
Sequencing | Illumina
2022-11-09 | Jilin Daxue Xuebao (Gongxueban)/Journal of Jilin University (Engineering and Technology Edition)
ENDOGENOUS PARARETROVIRUSES (EPRVs) IN LETTUCE GENOME ARE LESS EXPRESSED BUT PROBABLY SHARE CO-INFECTION
AHMED MUHAMMAD AL-SAHI, OSAMAH NADHIM ALISAWI, MAADH ABDULWAHAB AL-FAHAD

https://doi.org/10.17605/OSF.IO/6DWMY
Sequencing | Illumina
2022-11-09 | GigaScience
High-quality genome assembles from key Hawaiian coral species
Timothy G Stephens, JunMo Lee, YuJin Jeong, Hwan Su Yoon, Hollie M Putnam, Eva Majerova, Debashish Bhattacharya

https://doi.org/10.1093/gigascience/giac098
Sequencing | PacBio, Illumina
2022-11-05 | Archives of Microbiology
Sulfitobacter albidus sp. nov., isolated from marine sediment of Jeju Island
Minji Kim, In-Tae Cha, Ki-Eun Lee, Soo-Je Park

https://doi.org/10.1007/s00203-022-03305-x
Sequencing | PacBio
2022-11-02 | Cancer Discovery
AXL and Error-Prone DNA Replication Confer Drug Resistance and Offer Strategies to Treat EGFR-Mutant Lung Cancer
Ashish Noronha, Nishanth Belugali Nataraj, Joo Sang Lee, Benny Zhitomirsky, Yaara Oren, Sara Oster, Moshit Lindzen, Saptaparna Mukherjee, Rainer Will, Soma Ghosh, Arturo Simoni-Nieves, Aakanksha Verma, Rishita Chatterjee, Simone Borgoni, Welles Robinson, Sanju Sinha, Alexander Brandis, D Lucas Kerr, Wei Wu, Arunachalam Sekar, Suvendu Giri, Youngmin Chung, Diana Drago-Garcia, Brian P Danysh, Mattia Lauriola, Michelangelo Fiorentino, Andrea Ardizzoni, Moshe Oren, Collin M Blakely, Jideofor Ezike, Stefan Wiemann, Laxmi Parida, Trever G Bivona, Rami I Aqeilan, Joan S Brugge, Aviv Regev, Gad Getz, Eytan Ruppin, Yosef Yarden

https://doi.org/10.1158/2159-8290.CD-22-0111
Sequencing | Illumina
2022-11-01 | Scientific Reports
In silico, in vitro and in vivo characterization of host-associated Latilactobacillus curvatus strains for potential probiotic applications in farmed Atlantic salmon (Salmo salar)
Hannah S. Cathers, Shrinivasrao P. Mane, Nilesh R. Tawari, Jayanth Balakuntla, German Plata, Madan Krishnamurthy, Alicia MacDonald, Marilyn Wolter, Niel Baxter, Julian Briones, Akshitha Nagireddy, Gregory Millman, Roberto E. Martin, Arvind Kumar (Mahajan), Dharanesh Gangaiah

https://doi.org/10.1038/s41598-022-23009-y
Sample preparation, Sequencing | PacBio
2022-11-01 | Cells
The Immediate Early Response of Lens Epithelial Cells to Lens Injury
Samuel G. Novo, Adam P. Faranda, Mahbubul H. Shihan, Yan Wang, Ananya Garg, Melinda K. Duncan

https://doi.org/10.3390/cells11213456
Sequencing | Illumina
2022-11-01 | ISME Communications
Genomic insights into phage-host interaction in the deep-sea chemolithoautotrophic Campylobacterota, Nitratiruptor
Yukari Yoshida-Takashima, Yoshihiro Takaki, Mitsuhiro Yoshida, Yi Zhang, Takuro Nunoura, Ken Takai

https://doi.org/10.1038/s43705-022-00194-5
Sequencing | PacBio
2022-10-27 | Microorganisms
2,5-Diketo-D-Gluconate Hyperproducing Gluconobacter sphaericus SJF2-1 with Reporting Multiple Genes Encoding the Membrane-Associated Flavoprotein-Cytochrome c Complexed Dehydrogenases
Haelim Son, Sang-Uk Han, Kyoung Lee

https://doi.org/10.3390%2Fmicroorganisms10112130
Sequencing | PacBio, Illumina
2022-10-27 | FEMS Microbiology Letters
Transcriptomic analysis of lignocellulose degradation by Streptomyces coelicolor A3(2) and elicitation of secondary metabolites production
Ludovic Besaury, Jean Fromentin, Julian Detain, Carine Machado Rodrigues, Dominique Harakat, Caroline Remond

https://doi.org/10.1093/femsle/fnac101
Sample preparation, Sequencing | Illumina
2022-10-12 | Fish & Shellfish Immunology
Insight into the molecular structure and function of peptidoglycan recognition protein SC2 (PGRP-SC2) from Amphiprion clarkii: Investigating the role in innate immunity
Sarithaa Sellaththurai, Subothini Ganeshalingam, Sumi Jung, Ji Yong Choi, Dae-Jung Kim, Jehee Lee

https://doi.org/10.1016/j.fsi.2022.10.014
Sequencing | Illumina
2022-10-07 | bioRxiv
Telomere-to-Telomere and Haplotype-Phased Genome Assemblies of the Heterozygous Octoploid 'Florida Brilliance' Strawberry (Fragaria × ananassa)
Hyeondae Han, Christopher R Barbey, Zhen Fan, Sujeet Verma, Vance M. Whitaker, Seonghee Lee

https://doi.org/10.1101/2022.10.05.509768
Sample preparation, Sequencing | PacBio
2022-09-30 | Research Square
Phenotypic characterization of single CD4+ T cells harboring genetically intact and inducible HIV genomes
Caroline Dufour, Corentin Richard, Marion Pardons, Marta Massanella, Antoine Ackaoui, Ben Murrell, Bertrand Routy, Rejean Thomas, Jean-Pierre Routy, Remi Fromentin, Nicolas Chomont

https://doi.org/10.21203/rs.3.rs-2086397/v1
Sequencing | PacBio
2022-09-30 | Korean Journal of Microbiology
Complete genome sequence analysis of Photobacterium atrarenae GJH2-4 reveals its genetic capability for benzene degradation isolated from marine environment
Minji Kim, Soo-Je Park

https://doi.org/10.7845/kjm.2022.2046
Sequencing | PacBio
2022-09-29 | Biotechnology and Bioprocess Engineering
Pan-genome Analysis Reveals Comparative Genomic Features of Central Metabolic Pathways in Methylorubrum extorquens
Gyu Min Lee, Zoe K. Scott-Nevros, Sang-Mok Lee, Donghyuk Kim

https://doi.org/10.1007/s12257-022-0154-1
Sequencing | PacBio
2022-09-28 | Microbiome
Marine DNA methylation patterns are associated with microbial community composition and inform virus-host dynamics
Hoon Je Seong, Simon Roux, Chung Yeon Hwang, Woo Jun Sul

https://doi.org/10.1186/s40168-022-01340-w
Sequencing | PacBio
2022-09-26 | Microbiology Resource Announcements
Genome Sequences of the Human-Skin-Originated Brevundimonas albigilva TT17 and the Soil-Originated B. albigilva KEME 9005-016T
Haelim Son, Seung-Yoon Oh, Kyoung Lee

https://doi.org/10.1128/mra.00776-22
Sequencing | Illumina
2022-09-23 | Frontiers in Microbiology
Whole-genome sequence analysis for evaluating the safety and probiotic potential of Lactiplantibacillus pentosus 9D3, a gamma-aminobutyric acid (GABA)-producing strain isolated from Thai pickled weed
Nachon Raethong, Chalat Santivarangkna, Wonnop Visessanguan, Pannita Santiyanont, Wuttichai Mhuantong, Nipa Chokesajjawatee

https://doi.org/10.3389/fmicb.2022.969548
Sequencing | PacBio
2022-09-19 | Horticulture Research
High-quality chromosome-scale genomes facilitate effective identification of large structural variations in hot and sweet peppers
Joung-Ho Lee, Jelli Venkatesh, Jinkwan Jo, Siyoung Jang, Geon Woo Kim, Jung-Min Kim, Koeun Han, Nayoung Ro, Hea-Young Lee, Jin-Kyung Kwon, Yong-Min Kim, Tae-Ho Lee, Doil Choi, Allen Van Deynze, Theresa Hill, Nir Kfir, Aviad Freiman, Nelson H Davila Olivas, Yonatan Elkind, Ilan Paran, Byoung-Cheorl Kang

https://doi.org/10.1093/hr/uhac210
Sequencing | PacBio
2022-09-19 | Cancers
RNA-seq and ChIP-seq Identification of Unique and Overlapping Targets of GLI Transcription Factors in Melanoma Cell Lines
Matea Kurtovic, Nikolina Pitesa, Nenad Bartonicek, Petar Ozretic, Vesna Musani, Josipa Conkas, Tina Petric, Cecile King, Maja Sabol

https://doi.org/10.3390/cancers14184540
Sequencing | Illumina
2022-09-14 | International Journal of Molecular Sciences
Comparison of Gene Expression Changes in Three Wheat Varieties with Different Susceptibilities to Heat Stress Using RNA-Seq Analysis
Myoung Hui Lee, Kyeong-Min Kim, Wan-Gyu Sang, Chon-Sik Kang, Changhyun Choi

https://doi.org/10.3390/ijms231810734
Sequencing | Illumina
2022-09-13 | Archives of Phytopathology and Plant Protection
Genome sequencing of eggplant reveals Eggplant mild leaf mottle virus existence with associated two endogenous viruses in diseased eggplant in Iraq
Bahaa Khaffajah, Osamah Alisawi, Fadhl Al Fadhl

https://doi.org/10.1080/03235408.2022.2123601
Sequencing | PacBio
2022-09-13 | Horticulture Research
Genomic selection with fixed-effect markers improves the prediction accuracy for Capsaicinoid contents in Capsicum annuum
Geon Woo Kim, Ju-Pyo Hong, Hea-Young Lee, Jin-Kyung Kwon, Dong-Am Kim, Byoung-Cheorl Kang

https://doi.org/10.1093/hr/uhac204
Sequencing | Illumina
2022-09-05 | Mitochondrial DNA Part B
The complete mitochondrial genome of the sand dollar Astriclypeus mannii (Verrill, 1867) (Echinoidea: Astriclypeidae) in the subtidal sand flat in Jeju Island off the south coast of Korea
Jong-Seop Shin, Chi-une Song, Hyeongwoo Choi, Kae Kyoung Kwon, Do-Hyung Kang, Seong-il Eyun, Kwang-Sik Choi

https://doi.org/10.1080/23802359.2022.2116946
Sequencing | Illumina
2022-09-02 | Archives of Microbiology
Genomic sequence of the non-pathogen Neisseria sp. strain MA1-1 with antibiotic resistance and virulence factors isolated from a head and neck cancer patient
Eui Tae Kim, Young Suk Kim, Soo-Je Park

https://doi.org/10.1007/s00203-022-03212-1
Sequencing | Illumina
2022-08-29 | Preprints.org
Paving the Way for Gene Silencing in Lepidoptera: Integrated Sequencing Data Unveil the Rnai Core Machinery of Leucoptera Coffeella.
Natalia Martins, Eliza Nascimento, Leonardo Vidal, Vivian Lucena-Leandro, Camila Junqueira, Fernanda Soares, Marcos Viana, Pollyana Nobrega, Wagner Fontes, Isabelle Luz, Angela Mehta, Eduardo Romano, Wellington Clarindo, Juliana Dantas, Roberto Togawa, Erika Albuquerque

https://doi.org/10.20944/preprints202208.0465.v1
Sequencing | PacBio, Illumina
2022-08-26 | Genome Biology and Evolution
Comparative Genome and Evolution Analyses of an Endangered Stony Coral Species Dendrophyllia cribrosa Near Dokdo Islands in the East Sea
Jungeun Kim, Jae Pil Choi, Min Sun Kim, Yejin Jo, Won Gi Min, Seonock Woo, Seungshic Yum, Jong Bhak

https://doi.org/10.1093/gbe/evac132
Sequencing | PacBio, Illumina
2022-08-26 | Frontiers in Cell and Developmental Biology
Deficiency of the bZIP transcription factors Mafg and Mafk causes misexpression of genes in distinct pathways and results in lens embryonic developmental defects
Shaili D Patel, Deepti Anand, Hozumi Motohashi, Fumiki Katsuoka, Masayuki Yamamoto, Salil A Lachke

https://doi.org/10.3389/fcell.2022.981893
Sequencing | Illumina
2022-08-23 | International Journal of Molecular Sciences
Monitoring Circulating Tumor DNA in Untreated Non-Small-Cell Lung Cancer Patients
Woo Kyung Ryu, Sekyung Oh, Jun Hyeok Lim, Seung Jae Lee, Hyun-Tae Shin, Jeong-Seon Ryu

https://doi.org/10.3390/ijms23179527
Sample preparation, Sequencing, Bioinformatics, Author | Illumina
2022-08-23 | BMC Genomics
Whole-genome sequencing and analysis of Streptomyces strains producing multiple antinematode drugs
Jeong Sang Yi, Jung Min Kim, Min-Kyoung Kang, Jong Hoon Kim, Hang Su Cho, Yeon Hee Ban, Myoung Chong Song, Kwang-Hee Son, Yeo Joon Yoon

https://doi.org/10.1186/s12864-022-08847-4
Sequencing | Illumina
2022-08-15 | Microbiology Resource Announcements
Complete Genome Sequence of Micrococcus yunnanensis TT9, Isolated from a Healthy Volunteer
Yujin Choi, Haelim Son, Kyoung Lee

https://doi.org/10.1128/mra.00652-22
Sequencing | Illumina
2022-08-15 | mBio
A Two-Component-System-Governed Regulon That Includes a β-Lactamase Gene is Responsive to Cell Envelope Disturbance
Dongju Lee, Jongwook Park, Hyojeong Yi, Kwang-Hwi Cho, Heenam Stanley Kim

https://doi.org/10.1128/mbio.01749-22
Sequencing | Illumina
2022-07-14 | Genes
Dynamics of the Gut Microbiome and Transcriptome in Korea Native Ricefish (Oryzias latipes) during Chronic Antibiotic Exposure
Ju Bin Yoon, Sungmin Hwang, Jun Hyeok Yang, Seungki Lee, Woo Young Bang, Ki Hwan Moon

https://doi.org/10.3390/genes13071243
Sequencing | Illumina
2022-07-01 | Research Square
The genome size estimation and telomeric-repeat motifs of thirteen Arctic plants
Jun Kim, Moonkyo Kim, Yoo Kyung Lee

https://doi.org/10.21203/rs.3.rs-1783809/v1
Sequencing | Illumina
2022-06-26 | Research Square
Safety and efficacy of host-associated Latilactobacillus curvatus strains for potential probiotic applications in farmed Atlantic salmon (Salmo salar)
Hannah S. Cathers, Shrinivasrao P. Mane, Nilesh R. Tawari, Jayanth Balakuntla, German Plata, Madan Krishnamurthy, Alicia MacDonald, Marilyn Wolter, Niel Baxter, Julian Briones, Akshitha Nagireddy, Gregory Millman, Roberto E. Martin, Arvind Kumar, Dharanesh Gangaiah

https://doi.org/10.21203/rs.3.rs-1847801/v1
Sequencing | PacBio
2022-06-25 | Scientific Reports
The first long-read nuclear genome assembly of Oryza australiensis, a wild rice from northern Australia
Aaron L. Phillips, Scott Ferguson, Nathan S. Watson-Haigh, Ashley W. Jones, Justin O. Borevitz, Rachel A. Burton, Brian J. Atwell

https://doi.org/10.1038/s41598-022-14893-5
Sequencing | PacBio
2022-06-18 | Scientific Reports
Comparative genomic analysis of Streptomyces rapamycinicus NRRL 5491 and its mutant overproducing rapamycin
Hee-Geun Jo, Joshua Julio Adidjaja, Do-Kyung Kim, Bu-Soo Park, Namil Lee, Byung-Kwan Cho, Hyun Uk Kim, Min-Kyu Oh

https://doi.org/10.1038/s41598-022-14199-6
Sequencing | PacBio
2022-06-16 | Marine Drugs
Taeanamides A and B, Nonribosomal Lipo-Decapeptides Isolated from an Intertidal-Mudflat-Derived Streptomyces sp.
Jinsheng Cui, Eunji Kim, Dong Hyun Moon, Tae Ho Kim, Ilnam Kang, Yeonjung Lim, Daniel Shin, Sunghoon Hwang, Young Eun Du, Myoung Chong Song, Munhyung Bae, Jang-Cheon Cho, Jichan Jang, Sang Kook Lee, Yeo Joon Yoon, Dong-Chan Oh

https://doi.org/10.3390/md20060400
Sequencing | PacBio, Illumina
2022-06-03 | Archives of Microbiology
Bacteroides humanifaecis sp. nov., isolated from faeces of healthy Korean
Han Sol Kim, Ji-Sun Kim, Min Kuk Suh, Mi Kyung Eom, Ju Huck Lee, Seung-Hwan Park, Se Won Kang, Dong Ho Lee, Hyuk Yoon, Je Hee Lee, Jung-Sook Lee

https://doi.org/10.1007/s00203-022-02967-x
Sequencing | PacBio
2022-06-02 | Cell Stem Cell
Recapitulation of endogenous 4R tau expression and formation of insoluble tau in directly reprogrammed human neurons
Lucia S. Capano, Chihiro Sato, Elena Ficulle, Anan Yu, Kanta Horie, Ji-Sun Kwon, Kyle F. Burbach, Nicolas R. Barthelemy, Susan G. Fox, Celeste M. Karch, Randall J. Bateman, Henry Houlden, Richard I. Morimoto, David M. Holtzman, Karen E. Duff, Andrew S. Yoo

https://doi.org/10.1016/j.stem.2022.04.018
Sequencing | Illumina
2022-06-01 | Science Advances
Light-activated molecular machines are fast-acting broad-spectrum antibacterials that target the membrane
Ana L Santos, Dongdong Liu, Anna K Reed, Aaron M Wyderka, Alexis van Venrooy, John T Li, Victor D Li, Mikita Misiura, Olga Samoylova, Jacob L Beckham, Ciceron Ayala-Orozco, Anatoly B Kolomeisky, Lawrence B Alemany, Antonio Oliver, George P Tegos, James M Tour

https://doi.org/10.1126/sciadv.abm2055
Sequencing, Bioinformatics | Illumina
2022-06-01 | Investigative Ophthalmology & Visual Science
The adult human lens transcriptome changes with age
Melinda K Duncan, Adam Faranda, Samuel G Novo, Justin d'Antin, Yan Wang, Mahbubul H Shihan

https://iovs.arvojournals.org/article.aspx?articleid=2781192
Sequencing | Illumina
2022-05-31 | International Journal of Systematic and Evolutionary Microbiology
Chryseobacterium faecale sp. nov., isolated from camel feces
Yongjun Son, Jihyeon Min, Woojun Park

https://doi.org/10.1099/ijsem.0.005405
Sequencing | Illumina
2022-05-27 | Fish & Shellfish Immunology
Molecular cloning, expression analysis of interleukin 17D (cysteine knot cytokine) from Amphiprion clarkii and their functional characterization and NFκB pathway activation using FHM cells
D.S. Liyanage, W.K.M. Omeka, Kishanthini Nadarajapillai, Chaehyeon Lim, Hyerim Yang, Ji Young Choi, Kyong Min Kim, Jae Koo Noh, Taehyug Jeong, Jehee Lee

https://doi.org/10.1016/j.fsi.2022.05.047
Sequencing | Illumina
2022-05-14 | Biochemical and Biophysical Research Communications
BMP4 signaling plays critical roles in self-renewal of R2i mouse embryonic stem cells
Sara Taleahmad, Ali Salari, Azam Samadian, Se Hyun Chae, Daehee Hwang, Bonghee Lee, Delger Bayarsaikhan, Govigerel Bayarsaikhan, Jaesuk Lee, Ji Hwan Park, Seyedeh-Nafiseh Hassani, Hossein Baharvand, Ghasem Hosseini Salekdeh

https://doi.org/10.1016/j.bbrc.2022.05.036
Sequencing | Illumina
2022-05-07 | Journal of Dermatological Science
Nicotinamide mononucleotide reduces melanin production in aged melanocytes by inhibiting cAMP/Wnt signaling
Sofia Brito, Jin-Myoung Baek, Byungsun Cha, Hyojin Heo, Su-Hyun Lee, Lei Lei, So Young Jung, So Min Lee, Sang Hun Lee, Byeong-Mun Kwak, Sehyun Chae, Mi-Gi Lee, Bum-Ho Bin

https://doi.org/10.1016/j.jdermsci.2022.05.002
Sequencing | Illumina
2022-05-06 | Science Immunology
Recall of B cell memory depends on relative locations of prime and boost immunization
Masayuki Kuraoka, Chen-Hao Yeh, Goran Bajic, Ryutaro Kotaki, Shengli Song, Ian Windsor, Stephen C. Harrison, Garnett Kelsoe

https://doi.org/10.1126/sciimmunol.abn5311
Sequencing | PacBio
2022-05-03 | Bioengineering & Translational Medicine
Hyperelastic, shape-memorable, and ultra-cell-adhesive degradable polycaprolactone-polyurethane copolymer for tissue regeneration
Suk-Min Hong, Ji-Young Yoon, Jae-Ryung Cha, Junyong Ahn, Nandin Mandakhbayar, Jeong Hui Park, Junseop Im, Gangshi Jin, Moon-Young Kim, Jonathan C. Knowles, Hae-Hyoung Lee, Jung-Hwan Lee, Hae-Won Kim

https://doi.org/10.1002/btm2.10332
Sequencing | Illumina
2022-05-02 | medRxiv
Genetically determining individualized clinical reference ranges for the biomarker tryptase can limit unnecessary procedures and unmask myeloid neoplasms
Jack Chovanec, Ilker Tunc, Jason Hughes, Joseph Halstead, Allyson Mateja, Yihui Liu, Michael P. O'Connell, Jiwon Kim, Young Hwan Park, Qinlu Wang, Quang Le, Mehdi Pirooznia, Neil N. Trivedi, Yun Bai, Yuzhi Yin, Amy P. Hsu, Josh McElwee, Sheryce Lassiter, Celeste Nelson, Judy Bandoh, Thomas DiMaggio, Julij Selb, Matija Rijavec, Melody C. Carter, Hirsh D. Komarow, Vito Sabato, Joshua Steinberg, Kurt M. Hafer, Elizabeth Feuille, Christopher S. Hourigan, Justin Lack, Paneez Khoury, Irina Maric, Roberta Zanotti, Patrizia Bonadonna, Lawrence B. Schwartz, Joshua D. Milner, Sarah C. Glover, Didier G. Ebo, Peter Korosec, George H. Caughey, Erica H. Brittain., Ben Busby, Dean D. Metcalfe, Jonathan J. Lyons

https://doi.org/10.1101/2022.04.29.22274379
Sequencing | PacBio
2022-04-21 | International Journal of Systematic and Evolutionary Microbiology
Rhizorhabdus phycosphaerae sp. nov., isolated from the phycosphere of Microcystis aeruginosa
Minkyung Kim, Junshik Bae, Woojun Park

https://doi.org/10.1099/ijsem.0.005324
Sequencing | PacBio
2022-04-19 | Frontiers in Cell and Developmental Biology
A Stage-Specific OTX2 Regulatory Network and Maturation-Associated Gene Programs Are Inherent Barriers to RPE Neural Competency
Jared A. Tangeman, J. Raul Perez-Estrada, Emily Van Zeeland, Lin Liu, Alexandra Danciutiu, Erika Grajales-Esquivel, Byran Smucker, Chun Liang, Katia Del Rio-Tsonis

https://doi.org/10.3389/fcell.2022.875155
Sequencing | Illumina
2022-04-15 | Molecules and Cells
E3 ligase BRUTUS Is a Negative Regulator for the Cellular Energy Level and the Expression of Energy Metabolism-Related Genes Encoded by Two Organellar Genomes in Leaf Tissues
Bongsoo Choi, Do Young Hyeon, Juhun Lee, Terri A. Long, Daehee Hwang, Inhwan Hwang

https://doi.org/10.14348%2Fmolcells.2022.2029
Sequencing | Illumina
2022-04-14 | Research Square
Genome Sequencing-Based Evolutionary Prediction of Glycan-Adhering Lectins and Experimental Evaluation of a Lectin (FimH) Inhibitor Using an Enterohemorrhagic Escherichia coli Strain Isolated in Korea
Junyoung Park, Cheorl-Ho Kim, Seung-Hak Cho

https://doi.org/10.21203/rs.3.rs-1548018/v1
Sequencing | PacBio
2022-03-31 | Journal of Microbiology
Lysobacter ciconiae sp. nov., and Lysobacter avium sp. nov., isolated from the faeces of an Oriental stork
So-Yeon Lee, Pil Soo Kim, Hojun Sung, Dong-Wook Hyun, Jin-Woo Bae

https://doi.org/10.1007/s12275-022-1647-5
Sequencing | PacBio
2022-03-30 | Nature Communications
Tissue extracellular matrix hydrogels as alternatives to Matrigel for culturing gastrointestinal organoids
Suran Kim, Sungjin Min, Yi Sun Choi, Sung-Hyun Jo, Jae Hun Jung, Kyusun Han, Jin Kim, Soohwan An, Yong Woo Ji, Yun-Gon Kim, Seung-Woo Cho

https://doi.org/10.1038/s41467-022-29279-4
Sequencing | Illumina
2022-03-29 | Research Square
Microbacterium caeni sp. nov., a novel species isolated from sludge in Yeosu, Korea
You-Jung Jung, Sang-Hoon Lee, Na-Kyung Kim, Hyeokjun Yoon, Garam Jeong, Byoung-Hee Lee, Hee-Deung Park, Moonsuk Hur

https://doi.org/10.21203/rs.3.rs-1480371/v1
Sequencing | PacBio
2022-03-25 | Water Research
Abundance, diversity, and host assignment of total, intracellular, and extracellular antibiotic resistance genes in riverbed sediments
A.S. Deshpande, N.L. Fahrenfeld

https://doi.org/10.1016/j.watres.2022.118363
Sequencing | Illumina
2022-03-04 | Diversity
Photobacterium halophilum sp. nov. and a Salt-Loving Bacterium Isolated from Marine Sediment
Minji Kim, Ki-Eun Lee, In-Tae Cha, Soo-Je Park

https://doi.org/10.3390/d14030188
Sequencing | PacBio
2022-03-03 | Clinical Oral Investigations
The implication of holocytochrome c synthase mutation in Korean familial hypoplastic amelogenesis imperfecta
Hyejin Choi, Kwanghwan Lee, Donghyo Kim, Sanguk Kim, Jae Hoon Lee

https://doi.org/10.1007/s00784-022-04413-0
Sample preparation, Sequencing | Illumina
2022-02-18 | Archives of Microbiology
Larkinella humicola sp. nov., a gamma radiation-resistant bacterium isolated from soil
Yuna Park, Leonid N. Ten, Young Koung Lee, Hee-Young Jung, Myung Kyum Kim

https://doi.org/10.1007/s00203-022-02790-4
Sequencing | Illumina
2022-02-16 | Frontiers in Marine Science
Draft Assembled Genome of Walleye Pollock (Gadus chalcogrammus)
Eun Soo Noh, Byeong-chul Kang, Juyeon Kim, Ji-Hyeon Jeon, Young-Ok Kim, Soon-Gyu Byun, Woo-Jin Kim, Bo-Hye Nam

https://doi.org/10.3389/fmars.2022.744941
Sample preparation, Sequencing | PacBio, Illumina
2022-02-08 | Marine Pollution Bulletin
Molecular evidence for suppression of swimming behavior and reproduction in the estuarine rotifer Brachionus koreanus in response to COVID-19 disinfectants
Eun-Ji Won, Eunjin Byeon, Young Hwan Lee, Haksoo Jeong, Yoseop Lee, Min-Sub Kim, Hyeong-Wook Jo, Joon-Kwan Moon, Minghua Wang, Jae-Seong Lee, Kyung-Hoon Shin

https://doi.org/10.1016/j.marpolbul.2022.113396
Sequencing | Illumina
2022-02-03 | Communications Chemistry
The ubiquitous catechol moiety elicits siderophore and angucycline production in Streptomyces
Doris A. van Bergeijk, Somayah S. Elsayed, Chao Du, Isabel Nunez Santiago, Anna M. Roseboom, Le Zhang, Victor J. Carrion, Herman P. Spaink, Gilles P. van Wezel

https://doi.org/10.1038/s42004-022-00632-4
Sequencing | PacBio
2022-02-02 | Nature Communications
Constitutive activation of canonical Wnt signaling disrupts choroid plexus epithelial fate
Arpan Parichha, Varun Suresh, Mallika Chatterjee, Aditya Kshirsagar, Lihi Ben-Reuven, Tsviya Olender, M. Mark Taketo, Velena Radosevic, Mihaela Bobic-Rasonja, Sara Trnski, Michael J. Holtzman, Natasa Jovanov-Milosevic, Orly Reiner, Shubha Tole

https://doi.org/10.1038/s41467-021-27602-z
Sequencing | Illumina
2022-01-26 | PLOS ONE
In silico, in vitro and in vivo safety evaluation of Limosilactobacillus reuteri strains ATCC PTA-126787 & ATCC PTA-126788 for potential probiotic applications
Dharanesh Gangaiah, Shrinivasrao P. Mane, Nilesh R. Tawari, Nallakannu Lakshmanan, Valerie Ryan, Alyssa Volland, Dwi Susanti, Milind Patel, Abraham Abouzeid, Emily B. Helmes, Arvind Kumar

https://doi.org/10.1371/journal.pone.0262663
Sequencing | PacBio
2022-01-23 | Antonie van Leeuwenhoek
Aggregatimonas sangjinii gen. nov., sp. nov., a novel silver nanoparticle synthesizing bacterium belonging to the family Flavobacteriaceae
Dawoon Chung, Jaejoon Jung, Jaoon Young Hwan Kim, Kyung Woo Kim, Yong Min Kwon

https://doi.org/10.1007/s10482-021-01700-w
Sequencing | PacBio, Illumina
2022-01-20 | Molecules and Cells
SHORT-ROOT Controls Cell Elongation in the Etiolated Arabidopsis Hypocotyl
Souvik Dhar, Jinkwon Kim, Eun Kyung Yoon, Sejeong Jang, Kangseok Ko, Jun Lim

https://doi.org/10.14348/molcells.2021.5008
Sequencing, Microarray | Illumina, Affymetrix, Arabidopsis
2022-01-17 | International Journal of Systematic and Evolutionary Microbiology
Aquibium microcysteis gen. nov., sp. nov., isolated from a Microcystis aeruginosa culture and reclassification of Mesorhizobium carbonis as Aquibium carbonis comb. nov. and Mesorhizobium oceanicum as Aquibium oceanicum comb. Nov
Minkyung Kim, Wonjae Kim, Woojun Park

https://doi.org/10.1099/ijsem.0.005230
Sequencing | PacBio
2022-01-15 | Behavior Genetics
Age Effects Aggressive Behavior: RNA-Seq Analysis in Cattle with Implications for Studying Neoteny Under Domestication
Paulina G. Eusebi, Natalia Sevane, Thomas O’Rourke, Manuel Pizarro, Cedric Boeckx, Susana Dunner

https://doi.org/10.1007/s10519-021-10097-1
Sequencing | Illumina
2022-01-11 | Aging
Dietary curcumin restores insulin homeostasis in diet-induced obese aged mice
Su-Jeong Lee, Prabha Chandrasekran, Caio Henrique Mazucanti, Jennifer F. O’Connell, Josephine M. Egan, Yoo Kim

https://doi.org/10.18632/aging.203821
Sequencing, Bioinformatics | Illumina
2022-01-04 | Frontiers in Immunology
Modulation of Host Immune Response during Leishmania infantum Natural Infection: A Whole-Transcriptome Analysis of the Popliteal Lymph Nodes in Dogs
Carolina R. Sanz, Guadalupe Miro, Natalia Sevane, Armando Reyes-Palomares, Susana Dunner

https://doi.org/10.3389/fimmu.2021.794627
Sample preparation, Sequencing | Illumina
2022-01-03 | Frontiers in Marine Science
First Draft Genome of a Mud Loach (Misgurnus mizolepis) in the Family Cobitidae
Younhee Shin, Eun Soo Noh, Ji-Hyeon Jeon, Ga-Hee Shin, Eun Mi Kim, Young-Ok Kim, Hyeongsu Kim, Hyungtaek Jung, Bo-Hye Nam

https://doi.org/10.3389/fmars.2021.799148
Sample preparation, Sequencing | PacBio, Illumina
2022-01-03 | Fish & Shellfish Immunology
Molecular characterization and expression profiling of tandem-repeat galectin-8 from red-spotted grouper (Epinephelus akaara): Potential antibacterial, antiviral, and wound healing activities
Subothini Ganeshalingam, W.M. Gayashani Sandamalika, Chaehyeon Lim, Hyerim Yang, D.S. Liyanage, Kishanthini Nadarajapillai, Taehyug Jeong, Jehee Lee

https://doi.org/10.1016/j.fsi.2021.12.056
Sequencing | Illumina
2022-01-01 | Agriculture
Identification of Grain Size-Related QTLs in Korean japonica Rice Using Genome Resequencing and High-Throughput Image Analysis
Yunji Shin, Yong Jae Won, Chaewon Lee, Kyeong-Seong Cheon, Hyoja Oh, Gang-Seob Lee, Jeongho Baek, In Sun Yoon, Song Lim Kim, Young-Soon Cha, Kyung-Hwan Kim, Hyeonso Ji

https://doi.org/10.3390/agriculture12010051
Sequencing | PacBio
2022-01-01 | Theranostics
Mammalian Ssu72 phosphatase preferentially considers tissue-specific actively transcribed gene expression by regulating RNA Pol II transcription
Hyun-Soo Kim, Yoon Jeon, Yoon Ok Jang, Ho Lee, Yong Shin, Chang-Woo Lee

https://doi.org/10.7150%2Fthno.62274
Sequencing, Bioinformatics
2021-12-20 | bioRxiv
Recall of B cell memory depends on relative locations of prime and boost
Masayuki Kuraoka, Chen-Hao Yeh, Goran Bajic, Ryutaro Kotaki, Shengli Song, Stephen C. Harrison, Garnett Kelsoe

https://doi.org/10.1101/2021.12.17.472609
Sequencing | PacBio
2021-12-16 | International Journal of Systematic and Evolutionary Microbiology
Roseococcus microcysteis sp. nov., isolated from a Microcystis aeruginosa culture sample
Wonjae Kim, Minkyung Kim, Woojun Park

https://doi.org/10.1099/ijsem.0.005185
Sequencing | PacBio, Illumina
2021-12-01 | Korean Journal of Microbiology
Complete genome sequence analysis of Idiomarina abyssalis MSP-CT isolated from marine sediment, Jeju Island
Minji Kim, Soo-Je Park

https://www.dbpia.co.kr/Journal/articleDetail?nodeId=NODE11023225
Sequencing | PacBio
2021-11-24 | Applied and Environmental Microbiology
Metagenomic and Metatranscriptomic Characterization of a Microbial Community That Catalyzes Both Energy-Generating and Energy-Storing Electrode Reactions
Rebecca L. Mickol, Brian J. Eddie, Anthony P. Malanoski, Matthew D. Yates, Leonard M. Tender, Sarah M. Glaven

https://doi.org/10.1128/AEM.01676-21
Sequencing | Illumina
2021-11-22 | bioRxiv
Ploidy variation and its implications for reproduction and population dynamics in two sympatric Hawaiian coral species
Timothy G. Stephens, Emma L. Strand, Amin R. Mohamed, Amanda Williams, Eric N. Chiles, Xiaoyang Su, Debashish Bhattacharya, Hollie M. Putnam

https://doi.org/10.1101/2021.11.21.469467
Sequencing | PacBio, Illumina
2021-11-19 | Frontiers in Genetics
Chromosome-Scale Genome Assemblies of Two Korean Cucumber Inbred Lines
Kihwan Song, Younhee Shin, Myunghee Jung, Sathiyamoorthy Subramaniyam, Keun Pyo Lee, Eun-A Oh, Jin Ho Jeong, Jeong-Gu Kim

https://doi.org/10.3389/fgene.2021.733188
Sequencing | PacBio, Illumina
2021-11-18 | Mitochondrial DNA Part B
The complete chloroplast genome sequence of Viola verecunda (Violaceae)
Myounghai Kwak

https://doi.org/10.1080/23802359.2021.1997102
Sequencing | Illumina
2021-11-17 | BMC Genomics
Telomere-to-telomere genome assembly of asparaginase-producing Trichoderma simmonsii
Dawoon Chung, Yong Min Kwon, Youngik Yang

https://doi.org/10.1186/s12864-021-08162-4
Sequencing | Illumina
2021-11-08 | JCI Insight
αVβ8 integrin targeting to prevent posterior capsular opacification
Mahbubul H. Shihan, Samuel G. Novo, Yan Wang, Dean Sheppard, Amha Atakilit, Thomas D. Arnold, Nicole M. Rossi, Adam P. Faranda, Melinda K. Duncan

https://doi.org/10.1172%2Fjci.insight.145715
Sequencing | Illumina
2021-11-04 | bioRxiv
SVJAM: Joint Analysis of Structural Variants Using Linked Read Sequencing Data
Mustafa Hakan Gunturkun, Flavia Villani, Vincenza Colonna, David Ashbrook, Robert W. Williams, Hao Chen

https://doi.org/10.1101/2021.11.02.467006
Sequencing | Oxford Nanopore
2021-10-28 | Endocrinology and Metabolism
Whole-Exome Sequencing in Papillary Microcarcinoma: Potential Early Biomarkers of Lateral Lymph Node Metastasis
Mijin Kim, Chae Hwa Kwon, Min Hee Jang, Jeong Mi Kim, Eun Heui Kim, Yun Kyung Jeon, Sang Soo Kim, Kyung-Un Choi, In Joo Kim, Meeyoung Park, Bo Hyun Kim

https://doi.org/10.3803/EnM.2021.1132
Sequencing | Illumina
2021-10-23 | Molecular Ecology Resources
A chromosome-scale genome assembly and annotation of the spring orchid (Cymbidium goeringii)
Oksung Chung, Jungeun Kim, Dan Bolser, Hak-Min Kim, Je Hoon Jun, Jae-Pil Choi, Hyun-Do Jang, Yun Sung Cho, Jong Bhak, Myounghai Kwak

https://doi.org/10.1111/1755-0998.13537
Sequencing | PacBio
2021-10-20 | Frontiers in Microbiology
Multi-Omics Characterization of Host-Derived Bacillus spp. Probiotics for Improved Growth Performance in Poultry
Dwi Susanti, Alyssa Volland, Nilesh Tawari, Nielson Baxter, Dharanesh Gangaiah, German Plata, Akshitha Nagireddy, Troy Hawkins, Shrinivasrao P. Mane, Arvind Kumar

https://doi.org/10.3389/fmicb.2021.747845
Sequencing | PacBio
2021-10-09 | Cells
Enhanced Expression of microRNA-1273g-3p Contributes to Alzheimer's Disease Pathogenesis by Regulating the Expression of Mitochondrial Genes
So Hee Kim, Kyu Yeong Choi, Yega Park, Catriona McLean, Jiyu Park, Jung Hoon Lee, Kyung-Hwa Lee, Byeong C Kim, Yun Hyun Huh, Kun Ho Lee, Woo Keun Song

https://doi.org/10.3390/cells10102697
Sequencing, Microarray | Illumina, Affymetrix
2021-10-05 | bioRxiv
Constitutive activation of canonical Wnt signaling disrupts choroid plexus epithelial fate
Arpan Parichha, Varun Suresh, Mallika Chatterjee, Aditya Kshirsagar, Lihi Ben-Reuven, Tsviya Olender, M. Mark Taketo, Velena Radosevic, Mihaela Bobic-Rasonja, Sara Trnski, Michael J. Holtzman, Natasa Jovanov Milosevic, Orly Reiner, Shubha Tole

https://doi.org/10.1101/2020.12.08.415588
Sequencing | Illumina
2021-09-30 | Journal of Animal Science and Technology
Complete genome sequence of Lactobacillus amylovorus 1394N20, a potential probiotic strain, isolated from a Hanwoo calf
Young Joon Oh, Joon Yong Kim, Jieun Lee, Seul Ki Lim, Dohyeon Yu, Yeon-su Oh, Jinho Park, Hak-Jong Choi

https://doi.org/10.5187%2Fjast.2021.e100
Sequencing | PacBio
2021-09-27 | Frontiers in Genetics
Organelle Genome Variation in the Red Algal Genus Ahnfeltia (Florideophyceae)
Hocheol Kim, Ji Hyun Yang, Danilo E Bustamante, Martha S Calderon, Andres Mansilla, Christine A Maggs, Gayle I Hansen, Hwan Su Yoon

https://doi.org/10.3389/fgene.2021.724734
Sequencing | PacBio, Illumina
2021-09-09 | New Disease Reports
First report of Fig badnavirus-1 associated with Fig mosaic virus in fig in Iraq
S. Zagier, O. Alisawi, F. Al Fadhal

https://doi.org/10.1002/ndr2.12030
Sample preparation, Sequencing | Illumina
2021-09-08 | mSphere
An Escherichia coli FdrA Variant Derived from Syntrophic Coculture with a Methanogen Increases Succinate Production Due to Changes in Allantoin Degradation
Nam Yeun Kim, Yeon Joo Lee, Ji Won Park, Su Nyung Kim, E Young Kim, Yuseob Kim, Ok Bin Kim

https://doi.org/10.1128/mSphere.00654-21
Sequencing | Illumina
2021-08-21 | Comparative Biochemistry and Physiology Part B: Biochemistry and Molecular Biology
Molecular characterization of fish cytokine IL-17C from Amphiprion clarkii and its immunomodulatory effects on the responses to pathogen-associated molecular patterns and bacterial challenges
D.S. Liyanage, W.K.M. Omeka, Hyerim Yang, Chaehyeon Lim, Cheol Young Choi, Jehee Lee

https://doi.org/10.1016/j.cbpb.2021.110669
Sequencing | Illumina
2021-08-11 | Research Square
Adrenaline-mediated activation of antibiotic production in Streptomyces highlights catechol as elicitor of specialized metabolism
Gilles van Wezel, Doris van Bergeijk, Somayah Elsayed, Chao Du, Isabel Nunez Santiago, Anna Roseboom, Le Zhang, Victor Carrion, Herman Spaink

https://doi.org/10.21203/rs.3.rs-715051/v1
Sequencing | PacBio
2021-08-01 | Genes & Development
Transient genomic instability drives tumorigenesis through accelerated clonal evolution
Ofer Shoshani, Bjorn Bakker, Lauren de Haan, Andrea E. Tijhuis, Yin Wang, Dong Hyun Kim, Marcus Maldonado, Matthew A. Demarest, Jon Artates, Ouyang Zhengyu, Adam Mark, Rene Wardenaar, Roman Sasik, Diana C.J. Spierings, Benjamin Vitre, Kathleen Fisch, Floris Foijer, Don W. Cleveland

https://doi.org/10.1101%2Fgad.348319.121
Sequencing | Illumina
2021-07-27 | Molecular Plant
Direct acetylation of a conserved threonine of RIN4 by the bacterial effector HopZ5 or AvrBsT activates RPM1-dependent immunity in Arabidopsis
Sera Choi, Maxim Prokchorchik, Hyeonjung Lee, Ravi Gupta, Yoonyoung Lee, Eui-Hwan Chung, Buhyeon Cho, Min-Sung Kim, Sun Tae Kim, Kee Hoon Sohn

https://doi.org/10.1016/j.molp.2021.07.017
Sequencing | Illumina
2021-07-16 | Archives of Microbiology
Paenibacillus albiflavus sp. nov., a bacterium isolated from soil
Joo Hyun Han, Sang Eun Lee, Sathiyaraj Srinivasan

https://doi.org/10.1007/s00203-021-02476-3
Sequencing | Illumina
2021-07-15 | Cancer research
Host-Dependent Phenotypic Resistance to EGFR Tyrosine Kinase Inhibitors
Yuya Haga, Ilaria Marrocco, Ashish Noronha, Mary Luz Uribe, Nishanth Belugali Nataraj, Arunachalam Sekar, Diana Drago-Garcia, Simone Borgoni, Moshit Lindzen, Suvendu Giri, Stefan Wiemann, Yasuo Tsutsumi, Yosef Yarden

https://doi.org/10.1158%2F0008-5472.CAN-20-3555
Sequencing | Illumina
2021-07-09 | Animals
Genome of the Southern Giant Petrel Assembled Using Third-Generation DNA Sequencing and Linked Reads Reveals Evolutionary Traits of Southern Avian
Sun-Hee Kim, Seung-Jae Lee, Euna Jo, Jangyeon Kim, Jong-U Kim, Jeong-Hoon Kim, Hyun Park, Young-Min Chi

https://doi.org/10.3390/ani11072046
Sequencing, Author | PacBio, Illumina
2021-07-09 | Mitochondrial DNA Part B
The complete mitochondrial genome of Trissolcus japonicus (Hymenoptera: Scelionidae), the candidate for the biological control of Halyomorpha halys (Hemiptera: Pentatomidae)
Francesco Nardi, Claudio Cucini, Elena Cardaioli, Francesco Paoli, Giuseppino Sabbatini Peverieri, Pio Federico Roversi, Francesco Frati, Antonio Carapelli

https://doi.org/10.1080/23802359.2021.1948370
Sequencing | Illumina
2021-07-07 | International Journal of Systematic and Evolutionary Microbiology
Niveibacterium microcysteis sp. nov., isolated from a cyanobacterial bloom sample
Mingyeong Kang, Woojun Park

https://doi.org/10.1099/ijsem.0.004845
Sequencing | PacBio, Illumina
2021-07-06 | Bioactive Materials
Bio-printing of aligned GelMa-based cell-laden structure for muscle tissue regeneration
Hanjun Hwangbo, Hyeongjin Lee, Eun-Ju Jin, JaeYoon Lee, Yunju Jo, Dongryeol Ryu, GeunHyung Kim

https://doi.org/10.1016/j.bioactmat.2021.06.031
Sample preparation, Sequencing | Illumina
2021-06-28 | Research Square
Clinical Implication of Monitoring Circulating Tumor DNA in Untreated Non-Small-Cell Lung Cancer Patients
Jun Hyeok Lim, Hyun-Tae Shin, Sekyung Oh, Seung Jae Lee, Jeong-Seon Ryu

https://doi.org/10.21203/rs.3.rs-640389/v1
Sample preparation, Sequencing, Bioinformatics, Author | Illumina
2021-06-25 | Research Square
An auxin-mediated ultradian rhythm promotes root regeneration in Arabidopsis
Quy Vu, Kitae Song, Sung-Jin Park, Lin Xu, Hong Gil Nam, Sunghyun Hong

https://doi.org/10.21203/rs.3.rs-604908/v1
Sequencing | Illumina
2021-06-25 | Current Microbiology
Salinimonas marina sp. nov. Isolated from Jeju Island Marine Sediment
Minji Kim, Ki-Eun Lee, In-Tae Cha, Eui Tae Kim, Soo-Je Park

https://doi.org/10.1007/s00284-021-02576-9
Sequencingo | PacBio
2021-06-22 | The ISME Journal
Verrucomicrobial methanotrophs grow on diverse C3 compounds and use a homolog of particulate methane monooxygenase to oxidize acetone
Samuel Imisi Awala, Joo-Han Gwak, Yong-Man Kim, So-Jeong Kim, Andrea Strazzulli, Peter F. Dunfield, Hyeokjun Yoon, Geun-Joong Kim, Sung-Keun Rhee

https://doi.org/10.1038/s41396-021-01037-2
Sequencing | Illumina
2021-06-19 | International Journal of Molecular Sciences
Biosensor-Assisted Adaptive Laboratory Evolution for Violacein Production
Da-ae Gwon, Joo Yeon Seok, Gyoo Yeol Jung, Jeong Wook Lee

https://doi.org/10.3390/ijms22126594
Sequencing | Illumina
2021-06-17 | Experimental Eye Research
The effect of sex on the mouse lens transcriptome
Adam P. Faranda, Mahbubul H. Shihan, Yan Wang, Melinda K. Duncan

https://doi.org/10.1016/j.exer.2021.108676
Sequencing | Illumina
2021-06-16 | Annals of Clinical Microbiology and Antimicrobials
Role of AmpG in the resistance to β-lactam agents, including cephalosporins and carbapenems: candidate for a novel antimicrobial target
Roshan D’Souza, Le Phuong Nguyen, Naina A. Pinto, Hyunsook Lee, Thao Nguyen Vu, Hoyoung Kim, Hyun Soo Cho, Dongeun Yong

https://doi.org/10.1186/s12941-021-00446-7
Sequencing | PacBio
2021-06-11 | Experimental Eye Research
The aging mouse lens transcriptome
Adam P. Faranda, Mahbubul H. Shihan, Yan Wang, Melinda K. Duncan

https://doi.org/10.1016/j.exer.2021.108663
Sequencing | Illumina
2021-05-13 | Microbiology Resource Announcements
Draft Genome Sequence of Deefgea sp. Strain CFH1-16, Isolated from the Intestine of the Freshwater Fish Hypomesus nipponensis
Ji-Hye Han

https://doi.org/10.1128/mra.01389-20
Sequencing | PacBio
2021-05-12 | Science Translational Medicine
Avasopasem manganese synergizes with hypofractionated radiation to ablate tumors through the generation of hydrogen peroxide
Brock J Sishc , Lianghao Ding, Taek-Keun Nam, Collin D Heer, Samuel N Rodman, Joshua D Schoenfeld, Melissa A Fath, Debabrata Saha, Casey F Pulliam, Britta Langen, Robert A Beardsley, Dennis P Riley, Jeffery L Keene, Douglas R Spitz, Michael D Story

https://doi.org/10.1126/scitranslmed.abb3768
Sequencing | Illumina
2021-04-27 | Current Microbiology
Draconibacterium halophilum sp. nov., A Halophilic Bacterium Isolated from Marine Sediment
Minji Kim, Ki-Eun Lee, In-Tae Cha, Soo-Je Park

https://doi.org/10.1007/s00284-021-02496-8
Sequencing | PacBio
2021-04-24 | bioRxiv
Molecular diagnosis of new isolate of tomato yellow leaf curl virus in Iraq
Ali Alabde, Osamah Alisawi, Fadhal Al Fadhal

https://doi.org/10.1101/2021.04.02.438091
Sequencing | Illumina
2021-04-15 | Frontiers in Microbiology
Comparative Genomics Supports That Brazilian Bioethanol Saccharomyces cerevisiae Comprise a Unified Group of Domesticated Strains Related to Cachaca Spirit Yeasts
Ana Paula Jacobus, Timothy G. Stephens, Pierre Youssef, Raul Gonzalez-Pech, Michael M. Ciccotosto-Camp, Katherine E. Dougan, Yibi Chen, Luiz Carlos Basso, Jeverson Frazzon, Cheong Xin Chan, Jeferson Gross

https://doi.org/10.3389/fmicb.2021.644089
Sequencing | PacBio
2021-04-15 | Cell Death & Disease
FCN3 functions as a tumor suppressor of lung adenocarcinoma through induction of endoplasmic reticulum stress
Haeyeon Jang, Yukyung Jun, Suyeon Kim, Eunjeong Kim, Yeonjoo Jung, Byung Jo Park, Jinseon Lee, Jhingook Kim, Sanghyuk Lee, Jaesang Kim

https://doi.org/10.1038/s41419-021-03675-y
Sequencing | Illumina
2021-04-13 | International Journal of Systematic and Evolutionary Microbiology
Comamonas suwonensis sp. nov., isolated from stream water in the Republic of Korea
Kyu-Hyun Park, Zhi Yu, Ke Dong, Sang-Seob Lee

https://doi.org/10.1099/ijsem.0.004681
Sequencing | Illumina
2021-04-07 | BMC Genomics
Gene expression profiles underlying aggressive behavior in the prefrontal cortex of cattle
Paulina G. Eusebi, Natalia Sevane, Thomas O’Rourke, Manuel Pizarro, Cedric Boeckx, Susana Dunner

https://doi.org/10.1186/s12864-021-07505-5
Sequencing | Illumina
2021-04-04 | Fish & Shellfish Immunology
The possible role of catalase in innate immunity and diminution of cellular oxidative stress: Insights into its molecular characteristics, antioxidant activity, DNA protection, and transcriptional regulation in response to immune stimuli in yellowtail clownfish (Amphiprion clarkii)
W.M. Gayashani Sandamalik, Hyukjae Kwon, Chaehyeon Lim, Hyerim Yang, Jehee Lee

https://doi.org/10.1016/j.fsi.2021.03.022
Sequencing | Illumina
2021-03-29 | European Journal of Human Genetics
Whole exome sequencing reveals putatively novel associations in retinopathies and drusen formation
Lance P. Doucette, Nicole C. L. Noel, Yi Zhai, Manlong Xu, Oana Caluseriu, Stephanie C. Hoang, Alina J. Radziwon, Ian M. MacDonald

https://doi.org/10.1038/s41431-021-00872-3
Sequencing | Illumina
2021-03-21 | Microorganisms
In-Situ Metatranscriptomic Analyses Reveal the Metabolic Flexibility of the Thermophilic Anoxygenic Photosynthetic Bacterium Chloroflexus aggregans in a Hot Spring Cyanobacteria-Dominated Microbial Mat
Shigeru Kawai, Joval N. Martinez, Mads Lichtenberg, Erik Trampe, Michael Kuhl, Marcus Tank, Shin Haruta, Arisa Nishihara, Satoshi Hanada, Vera Thiel

https://doi.org/10.3390/microorganisms9030652
Sequencing | Illumina
2021-03-18 | Microbiology Resource Announcements
Draft Genome Sequence of Plant Growth-Promoting Rhizobacterium Burkholderia sp. Strain USMB20, Isolated from Nodules of Mucuna bracteata
Nurohaida Ab Aziz, Salwani Shaffie, Ahmad Yamin Abdul Rahman, Yam Hokchai, Nazalan Najimudin, Amir Hamzah Ahmad Ghazali

https://doi.org/10.1128/MRA.01051-20
Sequencing | PacBio
2021-03-16 | Frontiers in Plant Science
High-Resolution Transcriptome Atlas and Improved Genome Assembly of Common Buckwheat, Fagopyrum esculentum
Aleksey A. Penin, Artem S. Kasianov, Anna V. Klepikova, Ilya V. Kirov, Evgeny S. Gerasimov, Aleksey N. Fesenko, Maria D. Logacheva

https://doi.org/10.3389/fpls.2021.612382
Sequencing | PacBio
2021-03-12 | International Journal of Systematic and Evolutionary Microbiology
Flavobacterium phycosphaerae sp. nov. isolated from the phycosphere of Microcystis aeruginosa
Minkyung Kim, Byoung-Hee Lee, Ki-Eun Lee, Woojun Park

https://doi.org/10.1099/ijsem.0.004735
Sequencing | PacBio, Illumina
2021-03-11 | Microbiology Resource Announcements
Draft Genome Sequence of Streptomyces Strain SJ1-7, a Soil Bacterial Isolate
Won-Jae Chi, Da Som Kim, Soonok Kim, Eu Ddeum Choi, Sook-Young Park

https://doi.org/10.1128/MRA.01283-20
Sequencing | PacBio
2021-03-04 | Microbiology Resource Announcements
Complete Genome Sequence of Aureimonas sp. Strain OT7, Isolated from Human Skin
Munkhtsatsral Ganzorig, Kyoung Lee

https://doi.org/10.1128/mra.00024-21
Sequencing | PacBio
2021-02-25 | Frontiers in Cardiovascular Medicine
EZH2 Dynamically Associates With Non-coding RNAs in Mouse Hearts After Acute Angiotensin II Treatment
Shun Wang, Ningning Guo, Shuangling Li, Yuan He, Di Zheng, Lili Li, Zhihua Wang

https://doi.org/10.3389/fcvm.2021.585691
Sequencing | Illumina
2021-02-17 | Mitochondrial DNA Part B
Complete mitochondrial genome of Gloydius saxatilis (Viperidae: Crotalinae) from Korea
Yun Sun Lee, Min Seock Do, Hye Sook Jeon, Sang-Cheol Lee, Ji-Hwa Jung, Jae-Hwa Suh, Junghwa An

https://doi.org/10.1080/23802359.2021.1878957
Sequencing | Illumina
2021-02-12 | bioRxiv
Extensive N4 Cytosine Methylation is Essential for Marchantia Sperm Function
James Walker, Jingyi Zhang, Yalin Liu, Martin Vickers, Liam Dolan, Keiji Nakajima, Xiaoqi Feng

https://doi.org/10.1101/2021.02.12.428880
Sequencing | PacBio
2021-02-05 | Cancer Letters
DIM-C-pPhtBu induces lysosomal dysfunction and unfolded protein response - mediated cell death via excessive mitophagy
Sung Un Kang, Dae Ho Kim, Yun Sang Lee, Mei Huang, Hyung Kwon Byeon, Seong-Ho Lee, Seung Joon Baek, Chul-Ho Kim

https://doi.org/10.1016/j.canlet.2021.01.005
Sequencing | Illumina
2021-02-05 | bioRxiv
Direct acetylation of the conserved threonine of an immune regulator by bacterial effectors activates RPM1-dependent immunity in Arabidopsis
Sera Choi, Maxim Prokchorchik, Hyeonjung Lee, Ravi Gupta, Yoonyoung Lee, Buhyeon Cho, Min-Sung Kim, Sun Tae Kim, Kee Hoon Sohn

https://doi.org/10.1101/2021.02.05.426302
Sequencing | Illumina
2021-01-19 | FEMS Microbiology Letters
Proof of the triple prerequisite conditions which are essential for carbapenem resistance development in Klebsiella pneumoniae by using radiation-mediated mutagenesis
Naina Adren Pinto, Roshan D'Souza, Le Phuong Nguyen, Thao Nguyen Vu, Dongeun Yong

https://doi.org/10.1093/femsle/fnaa189
Sequencing | PacBio
2021-01-18 | Research Square
Gene Expression Profiles Underlying Aggressive Behavior in the Prefrontal Cortex of Cattle
Paulina G. Eusebi, Natalia Sevane, Thomas O’Rourke, Manuel Pizarro, Cedric Boeckx, Susana Dunner

https://doi.org/10.21203/rs.3.rs-146648/v1
Sequencing | Illumina
2021-01-15 | Antonie van Leeuwenhoek
Pseudocnuella soli gen. nov., sp. nov., a bacterium from soil belonging to the family Chitinophagaceae
Soohyun Maeng, Yuna Park, Ju Hyun Han, Sang Eun Lee, Myung Kyum Kim, Gayathri Subramani

https://doi.org/10.1007/s10482-020-01509-z
Sequencing | PacBio
2021-01-13 | Frontiers in Genetics
Draft Genome of the Edible Oriental Insect Protaetia brevitarsis seulensis
Joon Ha Lee, Myunghee Jung, Younhee Shin, Sathiyamoorthy Subramaniyam, In-Woo Kim, Minchul Seo, Mi-Ae Kim, Seong Hyun Kim, Jihye Hwang, Eun Hwa Choi, Ui Wook Hwang, Jae Sam Hwang

https://doi.org/10.3389/fgene.2020.593994
Sequencing | PacBio, Illumina
2021-01-13 | Mitochondrial DNA Part B
The complete chloroplast genome of Campanula takesimana Nakai from Dokdo Island in Korea (Campanulaceae)
Jongsun Park, Yoonhyuk Bae, Bo-Yun Kim, Gi-Heum Nam, Jeong-Mi Park, Byoung Yoon Lee, Hwa-Jung Suh, Sang-Hun Oh

https://doi.org/10.1080/23802359.2020.1851157
Sequencing | Illumina
2021-01-13 | Tree Physiology
Wood transcriptome analysis of Pinus densiflora identifies genes critical for secondary cell wall formation and NAC transcription factors involved in tracheid formation
Min-Ha Kim, Thi Ngoc Anh Tran, Jin-Seong Cho, Eung-Jun Park, Hyoshin Lee, Dong-Gwan Kim, Seongbin Hwang, Jae-Heung Ko

https://doi.org/10.1093/treephys/tpab001
Sequencing | PacBio
2021-01-11 | Frontiers in Genetics
The Draft Genome Sequence of a New Land-Hopper Platorchestia hallaensis
Ajit Kumar Patra, Oksung Chung, Ji Yong Yoo, Sang Ho Baek, Tae Won Jung, Min Seop Kim, Moon Geun Yoon, Youngik Yang, Jeong-Hyeon Choi

https://doi.org/10.3389/fgene.2020.621301
Sequencing | PacBio
2021-01-10 | International Journal of Molecular Sciences
CXCR4 Regulates Temporal Differentiation via PRC1 Complex in Organogenesis of Epithelial Glands
Junchul Kim, Sang-Woo Lee, Kyungpyo Park

https://doi.org/10.3390/ijms22020619
Sequencing | Illumina
2021-01-04 | Current Microbiology
Flaviaesturariibacter aridisoli sp. nov., A Bacterium Isolated from Dry Soil
Sang Eun Lee, Joo Hyun Han, Gayathri Sathiyaraj, Sathiyaraj Srinivasan

https://doi.org/10.1007/s00284-020-02312-9
Sequencing | Illumina
2020-12-31 | Korean Journal of Microbiology
Complete genome sequence of Janibacter indicus TT2, isolated from the human ear skin
Jargal Jambaldorj, Munkhtsatsral Ganzorig, Kyoung Lee

https://doi.org/10.7845/kjm.2020.0109
Sequencing | PacBio
2020-12-31 | Korean Journal of Microbiology
Draft genome sequence of the polysaccharide degrading bacterium Cytophagaceae strain SJW1-29
Kiwoon Baek, Ahyoung Choi

https://doi.org/10.7845/kjm.2020.0112
Sequencing | PacBio
2020-12-31 | Korean Journal of Microbiology
Complete genome sequence of a plant growth-promoting bacterium Pseudarthrobacter sp. NIBRBAC000502772, isolated from shooting range soil in the Republic of Korea
Min-Kyu Park, Yeong-Jun Park, Min-Chul Kim, Gi-Ung Kang, MinJi Kim, YoungJae Jo, Hyuk-Joon Kwon, Myung-Suk Kang, Min-Ha Kim, Soo-Young Kim, Jae-Ho Shin

https://doi.org/10.7845/kjm.2020.0066
Sequencing | PacBio
2020-12-23 | PLOS Biology
LSM12-EPAC1 defines a neuroprotective pathway that sustains the nucleocytoplasmic RAN gradient
Jongbo Lee, Jumin Park, Ji-hyung Kim, Giwook Lee, Tae-Eun Park, Ki-Jun Yoon,Yoon Ki Kim, Chunghun Lim

https://doi.org/10.1371/journal.pbio.3001002
Sequencing | Illumina
2020-12-16 | Nature
Creation of bladder assembloids mimicking tissue regeneration and cancer
Eunjee Kim, Seoyoung Choi, Byunghee Kang, JungHo Kong, Yubin Kim, Woong Hee Yoon, Hwa-Rim Lee, SungEun Kim, Hyo-Min Kim, HyeSun Lee, Chorong Yang, You Jeong Lee, Minyong Kang, Tae-Young Roh, Sungjune Jung, Sanguk Kim, Ja Hyeon Ku, Kunyoo Shin

https://doi.org/10.1038/s41586-020-3034-x
Sequencing | Illumina
2020-12-03 | International Journal of Systematic and Evolutionary Microbiology
Kineobactrum salinum sp. nov., isolated from marine sediment
Minji Kim, In-Tae Cha, Ki-Eun Lee, Byoung-Hee Lee, Soo-Je Park

https://doi.org/10.1099/ijsem.0.004586
Sequencing | PacBio
2020-12-01 | Journal of Industrial Microbiology and Biotechnology
Effects of a Δ-9-fatty acid desaturase and a cyclopropane-fatty acid synthase from the novel psychrophile Pseudomonas sp. B14-6 on bacterial membrane properties
Tae-Rim Choi, Ye-Lim Park, Hun-Suk Song, Sun Mi Lee, Sol Lee Park, Hye Soo Lee, Hyun-Joong Kim, Shashi Kant Bhatia, Ranjit Gurav, Yoo Kyung Lee, Changmin Sung, Yung-Hun Yang

https://doi.org/10.1007/s10295-020-02333-0
Sequencing | PacBio
2020-11-18 | Nature Communications
Genome-enabled discovery of anthraquinone biosynthesis in Senna tora
Sang-Ho Kang, Ramesh Prasad Pandey, Chang-Muk Lee, Joon-Soo Sim, Jin-Tae Jeong, Beom-Soon Choi, Myunghee Jung, Daniel Ginzburg, Kangmei Zhao, So Youn Won, Tae-Jin Oh, Yeisoo Yu, Nam-Hoon Kim, Ok Ran Lee, Tae-Ho Lee, Puspalata Bashyal, Tae-Su Kim, Woo-Haeng Lee, Charles Hawkins, Chang-Kug Kim, Jung Sun Kim, Byoung Ohg Ahn, Seung Yon Rhee, Jae Kyung Sohng

https://doi.org/10.1038/s41467-020-19681-1
Sequencing | PacBio
2020-11-13 | Genome Biology and Evolution
Evolutionary History of Mitochondrial Genomes in Discoba, Including the Extreme Halophile Pleurostomum flabellatum (Heterolobosea)
Khaoula Ettahi, Duckhyun Lhee, Ji Yeon Sung, Alastair G B Simpson, Jong Soo Park, Hwan Su Yoon

https://doi.org/10.1093/gbe/evaa241
Sequencing | Illumina
2020-11-12 | Science
A ubiquitin ligase mediates target-directed microRNA decay independently of tailing and trimming
Jaeil Han, Collette A LaVigne, Benjamin T Jones, He Zhang, Frank Gillett, Joshua T Mendell

https://doi.org/10.1126/science.abc9546
Sequencing | Illumina
2020-10-30 | Frontiers in Microbiology
Quorum Sensing System Affects the Plant Growth Promotion Traits of Serratia fonticola GS2
Byung Kwon Jung, Jerald Conrad Ibal, Huy Quang Pham, Min-Chul Kim, Gun-Seok Park, Sung-Jun Hong, Hyung Woo Jo, Chang Eon Park, Seung-Dae Choi, Yeongyun Jung, Setu Bazie Tagele, Jae-Ho Shin

https://doi.org/10.3389/fmicb.2020.536865
Sequencing | Illumina
2020-10-29 | Microbiology Resource Announcements
Genome Sequence of Clinical Strain Pseudomonas aeruginosa NRD619
Laura Sisk-Hackworth, Andrew Sue, Saima Aslam, Dwayne Roach

https://doi.org/10.1128/MRA.01013-20
Sequencing | PacBio
2020-10-29 | Stem Cell Reports
Leptin Receptor Signaling Regulates Protein Synthesis Pathways and Neuronal Differentiation in Pluripotent Stem Cells
Manoj K. Gupta, Heidrun Vethe, Samir Softic, Tata Nageswara Rao, Vilas Wagh, Jun Shirakawa, Harald Barsnes, Marc Vaudel, Tomozumi Takatani, Sevim Kahraman, Masaji Sakaguchi, Rachael Martinez, Jiang Hu, Yngvild Bjørlykke, Helge Raeder, Rohit N. Kulkarni

https://doi.org/10.1016/j.stemcr.2020.10.001
Sequencing | Illumina
2020-10-28 | Cell Death & Differentiation
RUNX3 methylation drives hypoxia-induced cell proliferation and antiapoptosis in early tumorigenesis
Sun Hee Lee, Do Young Hyeon, Soo-Hyun Yoon, Ji-Hak Jeong, Saeng-Myung Han, Ju-Won Jang, Minh Phuong Nguyen, Xin-Zi Chi, Sojin An, Kyung-gi Hyun, Hee-Jung Jung, Ji-Joon Song, Suk-Chul Bae, Woo-Ho Kim, Daehee Hwang, You Mie Lee

https://doi.org/10.1038/s41418-020-00647-1
Sequencing | Illumina
2020-10-26 | Nucleic Acids Research
Directed co-evolution of interacting protein-peptide pairs by compartmentalized two-hybrid replication (C2HR)
Jia Wei Siau, Samuel Nonis, Sharon Chee, Li Quan Koh, Fernando J Ferrer, Christopher J Brown, Farid J Ghadessy

https://doi.org/10.1093/nar/gkaa933
Sequencing | Illumina
2020-10-15 | Scientific Reports
Evaluation of the RAS signaling network in response to MEK inhibition using organoids derived from a familial adenomatous polyposis patient
Hiroki Osumi, Atsushi Muroi, Mizuho Sakahara, Hiroshi Kawachi, Takuya Okamoto, Yasuko Natsume, Hitomi Yamanaka, Hiroshi Takano, Daisuke Kusama, Eiji Shinozaki, Akira Ooki, Kensei Yamaguchi, Masashi Ueno, Kengo Takeuchi, Tetsuo Noda, Satoshi Nagayama, Naohiko Koshikawa, Ryoji Yao

https://doi.org/10.1038/s41598-020-74530-x
Sequencing | Illumina
2020-10-13 | International Journal of Systematic and Evolutionary Microbiology
Sphingomonas changnyeongensis sp. nov. isolated from the Hapcheon-Changnyeong barrage area in the Nakdong river
Chulwoo Park, Minkyung Kim, Byoung-Hee Lee, Ki-Eun Lee, Woojun Park

https://doi.org/10.1099/ijsem.0.004503
Sequencing | PacBio
2020-10-12 | Cancers
Comprehensive Exome Analysis of Immunocompetent Metastatic Head and Neck Cancer Models Reveals Patient Relevant Landscapes
Hui Li, Hoi-Lam Ngan, Yuchen Liu, Helen Hoi Yin Chan, Peony Hiu Yan Poon, Chun Kit Yeung, Yibing Peng, Wai Yip Lam, Benjamin Xiaoyi Li, Yukai He, Vivian Wai Yan Lui

https://doi.org/10.3390/cancers12102935
Sequencing | Illumina
2020-10-12 | Archives of Microbiology
Hymenobacter busanensis sp. nov., radiation-resistant species isolated from soil in South Korea
Sang Eun Lee, Leonid N. Ten, Yuna Park, Soohyun Maeng, Jing Zhang, Min-Kyu Kim, In-Tae Cha, Ki-Eun Lee, Byoung-Hee Lee, Hee-Young Jung, Myung Kyum Kim

https://doi.org/10.1007/s00203-020-02080-x
Sequencing | PacBio, Illumina
2020-10-08 | Microbiology Resource Announcements
Complete Genome Sequence of Yellow Pigment-Producing Sphingobium sp. Strain HAL-16
Soon Jae Kwon, Pyung Cheon Lee

https://doi.org/10.1128/MRA.00985-20
Sequencing | PacBio, Illumina
2020-10-08 | Microbiology Resource Announcements
Complete Genome Sequence of the Novel Psychrobacter sp. Strain AJ006, Which Has the Potential for Biomineralization
Jun Ho Lee, Pyung Cheon Lee

https://doi.org/10.1128/MRA.00986-20
Sequencing | PacBio, Illumina
2020-10-07 | Archives of Microbiology
Hymenobacter radiodurans sp. nov., isolated from soil in the Republic of Korea
Jun Hwee Jang, Soo Hyun Maeng, Hee Young Jung, Myung Kyum Kim, Gayathri Subramani

https://doi.org/10.1007/s00203-020-01895-y
Sequencing | PacBio
2020-09-25 | BMC Nephrology
RNA-Seq identifies condition-specific biological signatures of ischemia-reperfusion injury in the human kidney
Meeyoung Park, Chae Hwa Kwon, Hong Koo Ha, Miyeun Han, Sang Heon Song

https://doi.org/10.1186/s12882-020-02025-y
Sequencing | Illumina
2020-09-14 | Scientific Reports
Integrative genomic analysis of salivary duct carcinoma
Youngwook Kim, Sanghoon Song, Miran Lee, Teresa Swatloski, Joon Ho Kang, Young-Hyeh Ko, Woong-Yang Park, Han-Sin Jeong, Keunchil Park

https://doi.org/10.1038/s41598-020-72096-2
Sequencing | Illumina
2020-09-10 | Microbiology Resource Announcements
Complete Genome Sequence of the Carotenoid-Producing Strain Gordonia ajoucoccus A2
Soon Jae Kwon, Yong Jin Choi, Ju Min Kim, Pyung Cheon Lee

https://doi.org/10.1128/MRA.00662-20
Sequencing | PacBio, Illumina
2020-09-07 | BMC Evolutionary Biology
Potential causes and consequences of rapid mitochondrial genome evolution in thermoacidophilic Galdieria (Rhodophyta)
Chung Hyun Cho, Seung In Park, Claudia Ciniglia, Eun Chan Yang, Louis Graf, Debashish Bhattacharya, Hwan Su Yoon

https://doi.org/10.1186/s12862-020-01677-6
Sequencing | Illumina
2020-08-26 | Biotechnology for Biofuels
Zmo0994, a novel LEA-like protein from Zymomonas mobilis, increases multi-abiotic stress tolerance in Escherichia coli
Jungwoo Yang, Ha Eun Kim, Young Hoon Jung, Jungyeon Kim, Do Hyoung Kim, Adrian R. Walmsley, Kyoung Heon Kim

https://doi.org/10.1186/s13068-020-01790-0
Sample preparation, Sequencing | Illumina
2020-08-13 | Archives of Microbiology
Adhaeribacter soli sp. nov., a bacterium isolated from soil in Korea
Joo Hyun Han, Sukyung Kang, Myung Kyum Kim

https://doi.org/10.1007/s00203-020-01949-1
Sequencing | Illumina
2020-08-13 | Molecular Biology and Evolution
Amoeba Genome Reveals Dominant Host Contribution to Plastid Endosymbiosis
Duckhyun Lhee, JunMo Lee, Khaoula Ettahi, Chung Hyun Cho, Ji-San Ha, Ya-Fan Chan, Udi Zelzion, Timothy G Stephens, Dana C Price, Arwa Gabr, Eva C M Nowack, Debashish Bhattacharya, Hwan Su Yoon

https://doi.org/10.1093/molbev/msaa206
Sequencing | PacBio, Illumina
2020-08-11 | Cell Reports
Runx2+ Niche Cells Maintain Incisor Mesenchymal Tissue Homeostasis through IGF Signaling
Shuo Chen, Junjun Jing, Yuan Yuan, Jifan Feng, Xia Han, Quan Wen, Thach-Vu Ho, Chelsea Lee, Yang Chai

https://doi.org/10.1016/j.celrep.2020.108007
Sequencing | Illumina
2020-08-06 | Journal of Translational Medicine
PDX models of human lung squamous cell carcinoma: consideration of factors in preclinical and co-clinical applications
Hae-Yun Jung, Tae Ho Kim, Jong-Eun Lee, Hong Kwan Kim, Jong Ho Cho, Yong Soo Choi, Sumin Shin, Se-Hoon Lee, Hwanseok Rhee, Hee Kyung Lee, Hyun Jung Choi, Hye Yoon Jang, Seungjae Lee, Jung Hee Kang, Young Ae Choi, Sanghyuk Lee, Jinseon Lee, Yoon La Choi, Jhingook Kim

https://doi.org/10.1186/s12967-020-02473-y
Sequencing, Author | Illumina
2020-08-01 | bioRxiv
MiR-124 synergism with ELAVL3 enhances target gene expression to promote neuronal maturity
Ya-Lin Lu, Yangjian Liu, Matthew J. McCoy, Andrew S. Yoo

https://doi.org/10.1101/2020.03.25.006635
Sequencing | Illumina
2020-07-27 | Archives of Microbiology
Flaviaesturariibacter flavus sp. nov., isolated from soil in Jeju Island
Jun Hwee Jang, Soo Hyun Maeng, Hee Young Jung, Myung Kyum Kim, Gayathri Subramani

https://doi.org/10.1007/s00203-020-01963-3
Sequencing | Illumina
2020-07-23 | Antonie van Leeuwenhoek
Pontibacter pudoricolor sp. nov., and Pontibacter russatus sp. nov. radiation-resistant bacteria isolated from soil
Soohyun Maeng, Yuna Park, Sang Eun Lee, Joo Hyun Han, In-Tae Cha, Ki-Eun Lee, Byoung-Hee Lee, Myung Kyum Kim

https://doi.org/10.1007/s10482-020-01446-x
Sequencing | PacBio
2020-07-22 | BMC Medical Genetics
Gene expression profiling of fibroblasts in a family with LMNA-related cardiomyopathy reveals molecular pathways implicated in disease pathogenesis
Halida P. Widyastuti, Trina M. Norden-Krichmar, Anna Grosberg, Michael V. Zaragoza

https://doi.org/10.1186/s12881-020-01088-w
Sequencing | Illumina
2020-07-17 | Microorganisms
In vitro Edwardsiella piscicida CK108 Transcriptome Profiles with Subinhibitory Concentrations of Phenol and Formalin Reveal New Insights into Bacterial Pathogenesis Mechanisms
Ju Bin Yoon, Sungmin Hwang, Se-Won Baek, Seungki Lee, Woo Young Bang, Ki Hwan Moon

https://doi.org/10.3390/microorganisms8071068
Sequencing | Illumina
2020-07-15 | Mitochondrial DNA Part B
The complete chloroplast genome sequence of economical standard tea plant, Camellia sinensis L. cultivar Sangmok, in Korea
Dong-jun Lee, Chang-Kug Kim, Tae-Ho Lee, So-Jin Lee, Doo-Gyung Moon, Yong-Hee Kwon, Jeong-Yong Cho

https://doi.org/10.1080/23802359.2020.1790311
Sequencing | PacBio
2020-07-10 | Journal of Biotechnology
Effects of osmolytes on salt resistance of Halomonas socia CKY01 and identification of osmolytes-related genes by genome sequencing
Ye-Lim Park, Tae-Rim Choi, Yeong-Hoon Han, Hun-Suk Song, Jun-Young Park, Shashi Kant Bhatia, Ranjit Gurav, Kwon-Young Choi, Yun-Gon Kim, Yung-Hun Yang

https://doi.org/10.1016/j.jbiotec.2020.07.006
Sequencing | PacBio
2020-07-07 | Plant Molecular Biology
Transcriptome analysis of Eucalyptus grandis genotypes reveals constitutive overexpression of genes related to rust (Austropuccinia psidii) resistance
Samuel A. Santos, Pedro M. P. Vidigal, Lucio M. S. Guimaraes, Reginaldo G. Mafia, Matthew D. Templeton, Acelino C. Alfenas

https://doi.org/10.1007/s11103-020-01030-x
Sequencing | Illumina
2020-07-03 | Genomics
Molecular evolutionary and 3D protein structural analyses of Lactobacillus fermentum elongation factor Tu, a novel brain health promoting factor
Jia Sin Ong, Yen-Wenn Liu, Min-Tze Liong, Sy Bing Choi, Ying-Chieh Tsai, Wai Yee Low

https://doi.org/10.1016/j.ygeno.2020.06.052
Sequencing | PacBio, Illumina
2020-06-30 | Frontiers in Genetics
Workflow for the Implementation of Precision Genomics in Healthcare
Sanja Mehandziska, Aleksandra Stajkovska, Margarita Stavrevska, Kristina Jakovleva, Marija Janevska, Rodney Rosalia, Ivan Kungulovski, Zan Mitrev, Goran Kungulovski

https://doi.org/10.3389/fgene.2020.00619
Sequencing | Illumina
2020-06-27 | Archives of Microbiology
Sphingomonas parva sp. nov., isolated from soil in Jeju Island
Soohyun Maeng, Yuna Park, Ju Hyun Han, Sung Eun Lee, Chang-woo Ha, Myung Kyum Kim, Gayathri Subramani

https://doi.org/10.1007/s00203-020-01925-9
Sequencing | Illumina
2020-05-29 | International Journal of Molecular Sciences
Transcriptome Analysis of Maternal Gene Transcripts in Unfertilized Eggs of Misgurnus anguillicaudatus and Identification of Immune-Related Maternal Genes
Chan-Hee Kim, Eun Jeong Kim, Chaehwa Seo, Yoon Kwon Nam

https://doi.org/10.3390/ijms21113872
Sequencing, Bioinformatics, Author | Illumina
2020-05-18 | Frontiers in Plant Science
Genome Assembly and Annotation of Soft-Shelled Adlay (Coix lacryma-jobi Variety ma-yuen), a Cereal and Medicinal Crop in the Poaceae Family
Sang-Ho Kang, Byeollee Kim, Beom-Soon Choi, Hyun Oh Lee, Nam-Hoon Kim, Seung Jae Lee, Hye Sik Kim, Myung Ju Shin, Hyo-Won Kim, Kyunghyun Nam, Kyoung Dae Kang, Soo-Jin Kwon, Tae-Jin Oh, Sang-Choon Lee, Chang-Kug Kim

https://doi.org/10.3389/fpls.2020.00630
Sequencing, Bioinformatics, Author | PacBio, Illumina
2020-05-12 | Plants
Mitochondrial Genome of Fagopyrum esculentum and the Genetic Diversity of Extranuclear Genomes in Buckwheat
Maria D. Logacheva, Mikhail I. Schelkunov, Aleksey N. Fesenko, Artem S. Kasianov, Aleksey A. Penin

https://doi.org/10.3390%2Fplants9050618
Sequencing | PacBio
2020-04-24 | International Journal of Systematic and Evolutionary Microbiology
Jeotgalibaca ciconiae sp. nov., isolated from the faeces of an Oriental stork
So-Yeon Lee, Woorim Kang, Pil Soo Kim, Hyun Sik Kim, Hojun Sung, Na-Ri Shin, Ji-Hyun Yun, Jae-Yun Lee, June-Young Lee, Mi-Ja Jung, Yun-Seok Jeong, Euon Jung Tak, Jeong Eun Han, Dong-Wook Hyun, Myung-Suk Kang, Ki-Eun Lee, Byoung-Hee Lee, Jin-Woo Bae

https://doi.org/10.1099/ijsem.0.004163
Sequencing | PacBio
2020-04-19 | Biochemical and Biophysical Research Communications
Disruption of the polyubiquitin gene Ubb reduces the self-renewal capacity of neural stem cells
Chul-Woo Park, Byung-Kwon Jung, Kwon-Yul Ryu

https://doi.org/10.1016/j.bbrc.2020.04.042
Sequencing, Bioinformatics | Illumina
2020-04-08 | Plants
Assembly and Analysis of the Complete Mitochondrial Genome of Capsella bursa-pastoris
Denis O. Omelchenko, Maxim S. Makarenko, Artem S. Kasianov, Mikhail I. Schelkunov, Maria D. Logacheva, Aleksey A. Penin

https://doi.org/10.3390/plants9040469
Sequencing | PacBio
2020-04-02 | Fuel
Microbial enhanced oil recovery potential of surfactin-producing Bacillus subtilis AB2.0
Vanessa Marques Alvarez, Carolina Reis Guimaraes, Diogo Jurelevicius, Livia Vieira Araujo de Castilho, Joab Sampaio de Sousa, Fabio Faria da Mota, Denise Maria Guimaraes Freire, Lucy Seldina

https://doi.org/10.1016/j.fuel.2020.117730
Sequencing | PacBio
2020-04-01 | Molecular Plant-Microbe Interactions
High-Quality Genome Assembly of Peronospora destructor, the Causal Agent of Onion Downy Mildew
Karthi Natesan, Ji Yeon Park, Cheol-Woo Kim, Dong Suk Park, Young-Seok Kwon, Chang-Gi Back, Heejung Cho

https://doi.org/10.1094/MPMI-10-19-0280-A
Sequencing | PacBio
2020-03-31 | Korean Journal of Microbiology
Complete genome sequence of a ginsenoside-converting bacterium, Pseudobacter ginsenosidimutans Gsoil 221T, isolated from the soil of a ginseng field
Qing Mei Liu, Byoung Hee Lee, Ki-Eun Lee, Sang Yong Kim, Ji-Hyang Wee, Wan-Taek Im

https://doi.org/10.7845/kjm.2020.9127
Sequencing | PacBio
2020-03-31 | Korean Journal of Microbiology
Complete genome sequence of Novosphingobium ginsenosidimutans FW-6T, a ginsenoside-converting bacterium, isolated from fresh water
Qing Mei Liu, Byoung Hee Lee, Ki-Eun Lee, Sang Yong Kim, Ji-Hyang Wee, Wan-Taek Im

https://doi.org/10.7845/kjm.2020.9126
Sequencing | PacBio
2020-03-31 | Korean Journal of Microbiology
Complete genome sequence of Mucilaginibacter ginsenosidivorans Gsoil 3017T, a ginsenoside-converting bacterium, isolated from soil of a ginseng field
Young Woo Lee, Byoung Hee Lee, Ki-Eun Lee, Soon Youl Lee, Wan-Taek Im

https://doi.org/10.7845/kjm.2020.9128
Sequencing | PacBio
2020-03-31 | Korean Journal of Microbiology
Complete genome sequence of Mucilaginibacter ginsenosidivorax KHI-28T, a ginsenoside-converting bacterium, isolated from sediment
Young Woo Lee, Byoung Hee Lee, Ki-Eun Lee, Soon Youl Lee, Wan-Taek Im

https://doi.org/10.7845/kjm.2020.9129
Sequencing | PacBio
2020-03-27 | Biomolecules
Octominin Inhibits LPS-Induced Chemokine and Pro-inflammatory Cytokine Secretion from RAW 264.7 Macrophages via Blocking TLRs/NF-κB Signal Transduction
K. K. Asanka Sanjeewa, D. P. Nagahawatta, Hye-Won Yang, Jae Young Oh, Thilina U. Jayawardena, You-Jin Jeon, Mahanama De Zoysa, Ilson Whang, Bomi Ryu

https://doi.org/10.3390/biom10040511
Sequencing | PacBio
2020-03-23 | Mitochondrial DNA Part B
Complete mitogenomes of two orb-weaver spiders, Argiope bruennichi and Araneus ventricosus
Jung A. Kim, Hye Sook Jeon, Tae Hwa Kang, Jung Sun Yoo, Jumin Jun

https://doi.org/10.1080/23802359.2020.1741463
Sequencing | Illumina
2020-03-18 | Mitochondrial DNA Part B
Complete mitogenomes of two non-orb-weaving spiders, Pardosa astrigera and Agelena labyrinthica
Jung A. Kim, Hye Sook Jeon, Tae Hwa Kang, Jung Sun Yoo, Jumin Jun

https://doi.org/10.1080/23802359.2020.1741462
Sequencing | Illumina
2020-03-13 | Data in Brief
Genome data of shrimp acute hepatopancreatic necrosis disease causative Vibrio parahaemolyticus strains isolated from South Korea aquaculture farms
Seong DonHwang, Jee Youn Hwang, Saebom Sohn, Su Mi Kim, Seok Ryel Kim, Kwang Il Kim, Mun-Gyeong Kwon, Myung hee Jung, Kyoo-yeol Lee, Byeong-chul Kang, Jung Soo Seo

https://doi.org/10.1016/j.dib.2020.105697
Sample preparation, Sequencing | PacBio
2020-03-12 | Matrix Biology
Fibronectin has multifunctional roles in posterior capsular opacification (PCO)
Mahbubul H. Shihan, Mallika Kanwar, Yan Wang Erin E. Jackson, Adam P. Faranda, Melinda K. Duncan

https://doi.org/10.1016/j.matbio.2020.02.004
Sequencing | Illumina
2020-03-12 | Microbiology Resource Announcements
Complete Genome Sequence of Gordonia sp. Strain JH63, Isolated from Human Skin
Kyoung Lee, Sachin Kumar Badaya, Rajni Singh, Jae Yun Lim

https://doi.org/10.1128/MRA.00059-20
Sequencing | PacBio
2020-03-11 | bioRxiv
The superoxide dismutase mimetic GC4419 enhances tumor killing when combined with stereotactic ablative radiation
Brock J. Sishc, Lianghao Ding, Collin Heer, Debabrata Saha, Douglas R. Spitz, Michael D. Story

https://doi.org/10.1101/2020.03.10.984443
Sequencing | Illumina
2020-03-09 | Scientific Data
First draft genome for the sand-hopper Trinorchestia longiramus
Ajit Kumar Patra, Oksung Chung, Ji Yong Yoo, Min Seop Kim, Moon Geun Yoon, Jeong-Hyeon Choi, Youngik Yang

https://doi.org/10.1038/s41597-020-0424-8
Sequencing | PacBio
2020-03-03 | Cell Death & Differentiation
Deleting key autophagy elongation proteins induces acquirement of tumor-associated phenotypes via ISG15
EunBin Kong, Hag Dong Kim, Joon Kim

https://doi.org/10.1038/s41418-020-0519-y
Sequencing, Bioinformatics | Illumina
2020-03-03 | Nucleic Acids Research
Atm deficiency in the DNA polymerase β null cerebellum results in cerebellar ataxia and Itpr1 reduction associated with alteration of cytosine methylation
Jusik Kim, Keeeun Kim, Jung-soon Mo, Youngsoo Lee

https://doi.org/10.1093/nar/gkaa140
Sequencing | Illumina
2020-02-24 | Molecular Vision
Copy number variations and multiallelic variants in Korean patients with Leber congenital amaurosis
Dongheon Surl, Saeam Shin, Seung-Tae Lee, Jong Rak Choi, Junwon Lee, Suk Ho Byeon, Sueng-Han Han, Hyun Taek Lim, Jinu Han

http://www.ncbi.nlm.nih.gov/pmc/articles/pmc7043639/
Sequencing | Illumina
2020-01-25 | Plant Physiology and Biochemistry
Bacillus subtilis strain GOT9 confers enhanced tolerance to drought and salt stresses in Arabidopsis thaliana and Brassica campestris
Og-Geum Woo, Hani Kim, Jong-Shik Kim, Hye Lim Keum, Kyu-Chan Lee, Woo Jun Sul, Jae-Hoon Lee

https://doi.org/10.1016/j.plaphy.2020.01.032
Sequencing | PacBio, Illumina
2019-12-31 | Korean Journal of Microbiology
Complete genome sequence of Flavisolibacter ginsenosidimutans Gsoil 636T, a ginsenoside-converting bacterium, isolated from soil used for cultivating ginseng
Dong-Ho Keum, Byoung Hee Lee, Ki-Eun Lee, Soon Youl Lee, Wan-Taek Im

https://doi.org/10.7845/kjm.2019.9131
Sample preparation, Sequencing | PacBio
2019-12-31 | Korean Journal of Microbiology
Complete genome sequence of Panacibacter ginsenosidivorans Gsoil 1550T, a ginsenoside-converting bacterium, isolated from soil of a ginseng field
Dong-Ho Keum, Byoung Hee Lee, Ki-Eun Lee, Soon Youl Lee, Wan-Taek Im

https://doi.org/10.7845/kjm.2019.9134
Sample preparation, Sequencing | PacBio
2019-12-31 | Korean Journal of Microbiology
Complete genome sequence of Arachidicoccus ginsenosidivorans Gsoil 809T, a ginsenoside-converting bacterium, isolated from ginseng cultivating soil
Ji Eun Lee, Byoung Hee Lee, Ki-Eun Lee, Myung-Suk Kang, Wan-Taek Im

https://doi.org/10.7845/kjm.2019.9133
Sample preparation, Sequencing | PacBio
2019-12-31 | Korean Journal of Microbiology
Complete genome sequence of Anseongella ginsenosidimutans Gsoil 524T , a ginsenoside-converting bacterium, isolated from soil cultivating ginseng
Ji Eun Lee, Byoung Hee Lee, Ki-Eun Lee, Myung-Suk Kang, Wan-Taek Im

https://doi.org/10.7845/kjm.2019.9132
Sample preparation, Sequencing | PacBio
2019-12-31 | Korean Journal of Microbiology
Complete genome sequence of Thermaerobacter sp. FW80, an aerobic extremely thermophilic bacterium isolated from a food waste compost
Ji-Hyun Nam, Tae-U Kim, Dong-Hun Lee

https://doi.org/10.7845/kjm.2019.9148
Sample preparation, Sequencing | PacBio
2019-12-31 | Korean Journal of Microbiology
Complete genome sequence of Pseudarthrobacter sp. NIBRBAC000502771 isolated from shooting range soil in Republic of Korea
Min-Kyu Park, Yeong-Jun Park, Min-Chul Kim, Gi-Ung Kang, MinJi Kim, YoungJae Jo, Hyuk-Joon Kwon, Myung-Suk Kang, Min-Ha Kim, Soo-Young Kim, Jae-Ho Shin

https://doi.org/10.7845/kjm.2019.9094
Sample preparation, Sequencing | PacBio
2019-12-30 | Molecular Ecology Resources
Chromosomal-level assembly of Takifugu obscurus (Abe, 1949) genome using third-generation DNA sequencing and Hi-C analysis
Seunghyun Kang, Jin-Hyoung Kim, Euna Jo, Seung Jae Lee, Jihye Jung, Bo-Mi Kim, Jun Hyuck Lee, Tae-Jin Oh, Seungshic Yum, Jae-Sung Rhee, Hyun Park

https://doi.org/10.1111/1755-0998.13132
Sequencing, Author | PacBio
2019-12-23 | Genes
Expression of Heat Shock Proteins in Thermally Challenged Pacific Abalone Haliotis discus hannai
Dongsoo Kyeong, Juyeon Kim, Younhee Shin, ,Sathiyamoorthy Subramaniyam, Byeong-Chul Kang, Eun-Ha Shin, Eun Hee Park, Eun Soo Noh, Young-Ok Kim, Jung Youn Park, Bo-Hye Nam

https://doi.org/10.3390/genes11010022
Sequencing | Illumina
2019-12-13 | International Journal of Systematic and Evolutionary Microbiology
Algoriphagus aquimaris sp. nov., isolated from seashore sand
Jinsoo Kim, Sung-Ho Yoon, Keun-Hyeok Yang, Sungchul Kim, Sang-Seob Lee

https://doi.org/10.1099/ijsem.0.003793
Sample preparation, Sequencing | Illumina
2019-12-12 | Cancers
Somatic Mutation of PIK3CA (H1047R) Is a Common Driver Mutation Hotspot in Canine Mammary Tumors as Well as Human Breast Cancers
Kang-Hoon Lee, Hyeon-Ji Hwang, Hyun Ji Noh, Tae-Jin Shin, Je-Yoel Cho

https://doi.org/10.3390/cancers11122006
Sequencing | Illumina
2019-12-10 | Antonie van Leeuwenhoek
Hymenobacter jejuensis sp. nov., a UV radiation-tolerant bacterium isolated from Jeju Island
Soohyun Maeng, Myung Kyum Kim, Gayathri Subramani

https://doi.org/10.1007/s10482-019-01363-8
Sequencing | PacBio
2019-12-09 | Mitochondrial DNA Part B
Complete mitochondrial genome of Aethia cristatella (Charadriiformes: Alcidae)
Jung A Kim, Seung-Gu Kang, Jin Won Yang, Wee-Haeng Hur, Hyun-Jong Kil

https://doi.org/10.1080/23802359.2019.1693285
Sequencing | Illumina
2019-12-06 | Horticultural Plant Journal
Transcriptomic Analysis of Differentially Expressed Genes and Alternative Splicing Events Associated with Crassulacean Acid Metabolism in Orchids
Ying Zhang, Wei Dong, Xinghua Zhao, Aixia Song, Kangwei Guo, Zhongjian Liu, Liangsheng Zhang

https://doi.org/10.1016/j.hpj.2019.12.001
Sequencing | PacBio
2019-12-03 | Archives of Microbiology
Methylobacterium segetis sp. nov., a novel member of the family Methylobacteriaceae isolated from soil on Jeju Island
Leonid N. Ten, Weilan Li, Nabil Salah Elderiny, Myung Kyum Kim, Seung-Yeol Lee, Alejandro P. Rooney, Hee-Young Jung

https://doi.org/10.1007/s00203-019-01784-z
Sequencing | Illumina
2019-11-27 | Archives of Microbiology
Lysobacter terrigena sp. nov., isolated from a Korean soil sample
Weilan Li, Nabil Salah Elderiny, Leonid N. Ten, Seung-Yeol Lee, Myung Kyum Kim, Hee-Young Jung

https://doi.org/10.1007/s00203-019-01776-z
Sample preparation, Sequencing | Illumina
2019-11-26 | Redox Biology
Glutathione peroxidase-1 regulates adhesion and metastasis of triple-negative breast cancer cells via FAK signaling
Eunkyung Lee, Ahyoung Choi, Yukyung Jun, Namhee Kim, Jong In Yook, Soo Youl Kim, Sanghyuk Lee, Sang Won Kang

https://doi.org/10.1016/j.redox.2019.101391
Sequencing | Illumina
2019-11-20 | Mitochondrial DNA Part B
Mitochondrial genome of the Podosphaera xanthii: a plant pathogen causes powdery mildew in cucurbits
Seunghwan Kim, Myunghee Jung, Eun A. Oh, Tae Ho Kim, Jeong-Gu Kim

https://doi.org/10.1080/23802359.2019.1618209
Sequencing | PacBio
2019-11-14 | Current Microbiology
Lysobacter segetis sp. nov., Isolated from Soil
Leonid N. Ten, Jongguen Jeon, Nabil Salah Elderiny, Myung Kyum Kim, Seung-Yeol Lee, Hee-Young Jung

https://doi.org/10.1007/s00284-019-01801-w
Sequencing | Illumina
2019-11-08 | Mitochondrial DNA Part B
The complete chloroplast genome of Castanea crenata Sieb. & Zucc
Min-Jeong Kang, Tae-Dong Kim, Sang-A Lee, Hyo-Ryeon Lee, Chulwoo Kim, Hyoshin Lee, Eung-Jun Park

https://doi.org/10.1080/23802359.2019.1687038
Sequencing | PacBio
2019-11-07 | Microbiology Resource Announcements
Draft Genome Sequence of the Aquatic Fungus Margaritispora aquatica Strain NNIBRFG339
Jaeduk Goh, Hye Yeon Mun, Young-Hwan Park, Sangkyu Park, Yoosun Oh, Namil Chung

https://doi.org/10.1128/MRA.00866-19
Sequencing | PacBio, Illumina
2019-11-01 | International Journal of Systematic and Evolutionary Microbiology
Emticicia agri sp. nov., a novel member of the family Cytophagaceae
Leonid N. Ten1, Weilan Li, Aeri Ha, Myung Kyum Kim, Alejandro P. Rooney, Hee-Young Jung

https://doi.org/10.1099/ijsem.0.003651
Sequencing | Illumina
2019-10-21 | Antonie van Leeuwenhoek
Nocardioides jejuensis sp. nov., isolated from soil
Jun Hwee Jang, Soohyun Maeng, Hee-Young Jung, Myung Kyum Kim, Gayathri Subramani

https://doi.org/10.1007/s10482-019-01343-y
Sequencing | Illumina
2019-10-07 | bioRxiv
Paulinella micropora KR01 holobiont genome assembly for studying primary plastid evolution
Duckhyun Lhee, JunMo Lee, Chung Hyun Cho, Ji-San Ha, Sang Eun Jeong, Che Ok Jeon, Udi Zelzion, Dana C. Price, Ya-Fan Chan, Arwa Gabr, Debashish Bhattacharya, Hwan Su Yoon

https://doi.org/10.1101/794941
Sequencing | PacBio, Illumina
2019-10-01 | International Journal of Systematic and Evolutionary Microbiology
Undibacterium piscinae sp. nov., isolated from Korean shiner intestine
So-Yeon Lee, Woorim Kang, Pil Soo Kim, Hyun Sik Kim, Hojun Sung, Na-Ri Shin, Tae Woong Whon, Ji-Hyun Yun, Jae-Yun Lee, June-Young Lee, Mi-Ja Jung, Yun-Seok Jeong, Euon Jung Tak, Jeong Eun Han, Dong-Wook Hyun, Myung-Suk Kang, Ki-Eun Lee, Byoung-Hee Lee, Jin-Woo Bae

https://doi.org/10.1099/ijsem.0.003604
Sequencing | PacBio
2019-09-30 | Journal of Microbiology
Antarctic tundra soil metagenome as useful natural resources of cold-active lignocelluolytic enzymes
Han Na Oh, Doyoung Park, Hoon Je Seong, Dockyu Kim, Woo Jun Sul

https://doi.org/10.1007/s12275-019-9217-1
Sequencing | PacBio
2019-09-30 | ACS Omega
Detection and Quantification of GPCR mRNA: An Assessment and Implications of Data from High-Content Methods
Krishna Sriram, Shu Z. Wiley, Kevin Moyung, Matthew W. Gorr, Cristina Salmeron, Jordin Marucut, Randall P. French, Andrew M. Lowy, Paul A. Insel

https://doi.org/10.1021/acsomega.9b02811
Sequencing | Illumina
2019-09-23 | Biotechnology for Biofuels
Domestication of the novel alcohologenic acetogen Clostridium sp. AWRP: from isolation to characterization for syngas fermentation
Joungmin Lee, Jin Woo Lee, Cheol Gi Chae, Soo Jae Kwon, Yun Jae Kim, Jung-Hyun Lee, Hyun Sook Lee

https://doi.org/10.1186/s13068-019-1570-0
Sequencing | PacBio
2019-09-12 | Cell Stem Cell
Mitigating Antagonism between Transcription and Proliferation Allows Near-Deterministic Cellular Reprogramming
Kimberley N. Babos, Kate E. Galloway, Kassandra Kisler, Madison Zitting, Yichen Li, Yingxiao Shi, Brooke Quintino, Robert H. Chow, Berislav V. Zlokovic, Justin K. Ichida

https://doi.org/10.1016/j.stem.2019.08.005
Sequencing | Illumina
2019-09-12 | Microbiology Resource Announcements
Complete Genome Sequence of Phreatobacter sp. Strain NMCR1094, a Formate-Utilizing Bacterium Isolated from a Freshwater Stream
Kiwoon Baek, Ahyoung Choi

https://doi.org/10.1128/MRA.00860-19
Sequencing | PacBio
2019-09-11 | bioRxiv
Hispanic/Latino gastric adenocarcinoma patients have distinct molecular profiles including a high rate of germline CDH1 mutations
Sam C. Wang, Yunku Yeu, Suntrea T.G. Hammer, Shu Xiao, Min Zhu, Changjin Hong, Lynn Y. Yoon, Ibrahim Nassour, Jeanne Shen, Deepak Agarwal, Scott I. Reznik, John C. Mansour, Adam C. Yopp, Hao Zhu, Tae Hyun Hwang, Matthew R. Porembka

https://doi.org/10.1101/764779
Sequencing | Illumina
2019-09-05 | Microbiology Resource Announcements
Complete Genome Sequence of a Parabacteroides distasonis Strain (CavFT hAR46) Isolated from a Gut Wall-Cavitating Microlesion in a Patient with Severe Crohn's Disease
Falong Yang, Anand Kumar, Karen Walston Davenport, Julia Mae Kelliher, Jessica C. Ezeji, Caryn E. Good, Michael R. Jacobs, Mathew Conger, Gail West, Claudio Fiocchi, Fabio Cominelli, Armand Earl Ko Dichosa, Alexander Rodriguez-Palacios

https://doi.org/10.1128/MRA.00585-19
Sequencing | PacBio
2019-09-05 | Microbiology Resource Announcements
Complete Genome Sequence of Leisingera aquamixtae R2C4, Isolated from a Self-Regenerating Biocathode Consortium
Lina Bird, Brian J. Eddie, Anthony P. Malanoski, Princess Pinamang, Sarah M. Glaven

https://doi.org/10.1128/MRA.00833-19
Sequencing | PacBio
2019-09-03 | Molecular Cancer Research
Identification of De Novo Enhancers Activated by TGFβ to Drive Expression of CDKN2A and B in HeLa Cells
Yen-Ting Liu, Lin Xu, Lynda Bennett, Jared C. Hooks, Jing Liu, Qinbo Zhou, Priscilla Liem, Yanbin Zheng, Stephen X. Skapek

https://doi.org/10.1158/1541-7786.MCR-19-0289
Sequencing | Illumina
2019-09-01 | International Journal of Systematic and Evolutionary Microbiology
Ruegeria lutea sp. nov., isolated from marine sediment, Masan Bay, South Korea
Jinsoo Kim, Da-Young Kim, Keun-Hyeok Yang, Sungchul Kim, Sang-Seob Lee

https://doi.org/10.1099/ijsem.0.003568
Sequencing | Illumina
2019-08-01 | Molecular Plant-Microbe Interactions
High Contiguity Whole Genome Sequence and Gene Annotation Resource for Two Venturia nashicola Isolates
Maxim Prokchorchik, Kyungho Won, Yoonyoung Lee, Eu Ddeum Choi, Cecile Segonzac, Kee Hoon Sohn

https://doi.org/10.1094/MPMI-03-19-0072-A
Sequencing | PacBio
2019-08-01 | International Journal of Systematic and Evolutionary Microbiology
Shewanella psychromarinicola sp. nov., a psychrophilic bacterium isolated from pelagic sediment of the Ross Sea (Antarctica), and reclassification of Shewanella arctica Kim et al. 2012 as a later heterotypic synonym of Shewanella frigidimarina Bowman et al. 1997
Yeon Ju Hwang, Gwang Il Jang, Byung Cheol Cho, Jae Il Lee, Chung Yeon Hwang

https://doi.org/10.1099/ijsem.0.003490
Sequencing | PacBio
2019-07-26 | Current Microbiology
Mucilaginibacter terrigena sp. nov. sp., A Novel Member of the Family Sphingobacteriaceae
Leonid N. Ten, Na Yeong Jeon, Weilan Li, Young-Je Cho, Myung Kyum Kim, Seung-Yeol Lee, Alejandro P. Rooney, Hee-Young Jung

https://doi.org/10.1007/s00284-019-01748-y
Sequencing | Illumina
2019-07-23 | Clinical Immunology
Variants at potential loci associated with Sjogren's syndrome in Koreans: A genetic association study
Qingxia Shen, Kwanghwan Lee, Seong Kyu Han, Hyung-Joon Ahn, Sanguk Kim, Jae HoonLee

https://doi.org/10.1016/j.clim.2019.07.010
Sample preparation, Sequencing | Illumina
2019-07-20 | Journal of Phycology
Dictyochophyceae Plastid Genomes Reveal Unusual Variability in Their Organization
Kwi Young Han, Kacper Maciszewski, Louis Graf, Ji Hyun Yang, Robert A. Andersen, Anna Karnkowska, Hwan Su Yoon

https://doi.org/10.1111/jpy.12904
Sequencing | Illumina
2019-07-19 | PLOS Biology
LATS1/2 suppress NFκB and aberrant EMT initiation to permit pancreatic progenitor differentiation
Caitlin M. Braitsch, D. Berfin Azizoglu,Yadanar Htike, Haley R. Barlow, Ulrike Schnell, Christopher P. Chaney, Thomas J. Carroll, Ben Z. Stanger, Ondine Cleaver

https://doi.org/10.1371/journal.pbio.3000382
Sequencing | Illumina
2019-07-18 | Mitochondrial DNA Part B
The mitochondrial genome of the goosander (Mergus merganser) determined using next-generation sequencing
Seon-Mi Lee, Hye Sook Jeon, Jung A Kim, Jisoo Kim, Jungeun Park, Hyun-Jong Kil

https://doi.org/10.1080/23802359.2019.1640080
Sample preparation, Sequencing | Illumina
2019-07-11 | Microbiology Resource Announcements
Complete Genome Sequence of Kocuria indica CE7, Isolated from Human Skin
Kyoung Lee, Munkhtsatsral Ganzorig, Ji Yoon Jung, Sachin Kumar Badaya, Jae Yun Lim

https://doi.org/10.1128/MRA.00607-19
Sequencing | PacBio
2019-06-01 | Archives of Microbiology
Paenibacillus albus sp. nov., a UV radiation-resistant bacterium isolated from soil in Korea
Jun Hwee Jang, Soo Hyun Maeng, Srinivasan Sathiyaraj, Gayathri Subramani, Hee Young Jung, Myung Kyum Kim

https://doi.org/10.1007/s00203-019-01669-1
Sequencing | PacBio
2019-05-28 | Asian-Australasian Journal of Animal Sciences
Analysis of allele-specific expression using RNA-seq of the Korean native pig and Landrace reciprocal cross
Byeongyong Ahn, Min-Kyeung Choi, Joori Yum, In-Cheol Cho, Jin-Hoi Kim, Chankyu Park

https://doi.org/10.5713%2Fajas.19.0097
Sequencing | Illumina
2019-05-12 | Fish & Shellfish Immunology
Immune and xenobiotic responses of glutathione S-Transferase theta (GST-θ) from marine invertebrate disk abalone (Haliotis discus discus): With molecular characterization and functional analysis
W.M. Gayashani Sandamalika, Thanthrige Thiunuwan Priyathilaka, Seongdo Lee, Hyerim Yang Jehee Lee

https://doi.org/10.1016/j.fsi.2019.04.004
Sequencing | Roche
2019-05-09 | PLOS Pathogens
Multi-omics characterization of the necrotrophic mycoparasite Saccharomycopsis schoenii
Klara Junker, Anna Chailyan, Ana Hesselbart, Jochen Forster, Jurgen Wendland

https://doi.org/10.1371/journal.ppat.1007692
Sequencing | PacBio
2019-05-02 | Microbiology Resource Announcements
First Complete Genome Sequence of Haematobacter massiliensis OT1 (Chromosome and Multiple Plasmids), Isolated from Human Skin
Jae Yun Lim, Munkhtsatsral Ganzorig, Shir-Ly Huang, Kyoung Lee

https://doi.org/10.1128/MRA.00292-19
Sequencing | PacBio
2019-05-01 | Journal of Virology
A Highly Unusual V1 Region of Env in an Elite Controller of HIV Infection
Zachary A. Silver, Gordon M. Dickinson, Michael S. Seaman, Ronald C. Desrosiers

https://doi.org/10.1128/JVI.00094-19
Sequencing | PacBio
2019-04-29 | The Oncologist
Feasibility of Bronchial Washing Fluid-Based Approach to Early-Stage Lung Cancer Diagnosis
Jeong-Seon Ryu, Jun Hyeok Lim, Myoung Kyu Lee, Seung Jae Lee, Hyun-Jung Kim, Min Jeong Kim, Mi Hwa Park, Jung Soo Kim, Hae-Seong Nam, Nuri Park, Seok Joong Yong

https://doi.org/10.1634/theoncologist.2019-0147
Sequencing, Author | Illumina
2019-03-26 | Molecular Oncology
Identification of tumor suppressor miRNAs by integrative miRNA and mRNA sequencing of matched tumor-normal samples in lung adenocarcinoma
Namhee Yu, Seunghui Yong, Hong Kwan Kim, Yoon-La Choi, Yeonjoo Jung, Doyeon Kim, Jihae Seo, Ye Eun Lee, Daehyun Baek, Jinseon Lee, Seungjae Lee, Jong Eun Lee, Jaesang Kim, Jhingook Kim, Sanghyuk Lee

https://doi.org/10.1002/1878-0261.12478
Sequencing, Author | Illumina
2019-03-15 | Frontiers in Microbiology
Prediction of Host-Specific Genes by Pan-Genome Analyses of the Korean Ralstonia solanacearum Species Complex
Heejung Cho, Eun-Sung Song, Sunggi Heu, JeongHo Baek, Young Kee Lee, Seungdon Lee, Seon-Woo Lee, Dong Suk Park, Tae-Ho Lee, Jeong-Gu Kim, Ingyu Hwang

https://doi.org/10.3389/fmicb.2019.00506
Sequencing | PacBio
2019-03-13 | Soil Biology and Biochemistry
Local-scale variation of soil bacterial communities in ice-free regions of maritime Antarctica
Mincheol Kim, Hyun-Soo Lim, Chang-Uk Hyun, Ahnna Cho, Hyun-Ju Noh, Soon Gyu Hong, Ok-Sun Kim

https://doi.org/10.1016/j.soilbio.2019.03.011
Sequencing | Roche
2019-02-27 | Cell Death & Disease
Organoids as a new model for improving regenerative medicine and cancer personalized therapy in renal diseases
Ludovica Grassi, Romina Alfonsi, Federica Francescangeli, Michele Signore, Maria Laura De Angelis, Antonio Addario, Manuela Costantini, Elisabetta Flex, Andrea Ciolfi, Simone Pizzi, Alessandro Bruselles, Matteo Pallocca, Giuseppe Simone, Mustapha Haoui, Mario Falchi, Michele Milella, Steno Sentinelli, Paola Di Matteo, Emilia Stellacci, Michele Gallucci, Giovanni Muto, Marco Tartaglia, Ruggero De Maria, Desiree Bonci

https://doi.org/10.1038/s41419-019-1453-0
Sequencing | Illumina
2019-02-25 | Nature Ecology & Evolution
Antarctic blackfin icefish genome reveals adaptations to extreme environments
Bo-Mi Kim, Angel Amores, Seunghyun Kang, Do-Hwan Ahn, Jin-Hyoung Kim, Il-Chan Kim, Jun Hyuck Lee, Sung Gu Lee, Hyoungseok Lee, Jungeun Lee, Han-Woo Kim, Thomas Desvignes, Peter Batzel, Jason Sydes, Tom Titus, Catherine A. Wilson, Julian M. Catchen, Wesley C. Warren, Manfred Schartl, H. William Detrich III, John H. Postlethwait, Hyun Park

https://doi.org/10.1038/s41559-019-0812-7
Sequencing | PacBio
2019-02-22 | Scientific Reports
Genome analysis of the rice coral Montipora capitata
Alexander Shumaker, Hollie M. Putnam, Huan Qiu, Dana C. Price, Ehud Zelzion, Arye Harel, Nicole E. Wagner, Ruth D. Gates, Hwan Su Yoon, Debashish Bhattacharya

https://doi.org/10.1038/s41598-019-39274-3
Sequencing, Bioinformatics | PacBio
2019-02-22 | Scientific Reports
Evolutionary dynamics of the chromatophore genome in three photosynthetic Paulinella species
Duckhyun Lhee, Ji-San Ha, Sunju Kim, Myung Gil Park, Debashish Bhattacharya, Hwan Su Yoo

https://doi.org/10.1038/s41598-019-38621-8
Sequencing | Illumina
2019-02-20 | Molecules
Therapeutic Effects of HIF-1α on Bone Formation around Implants in Diabetic Mice Using Cell-Penetrating DNA-Binding Protein
Sang-Min Oh, Jin-Su Shin, Il-Koo Kim, Jung-Ho Kim, Jae-Seung Moon, Sang-Kyou Lee, Jae-Hoon Lee

https://doi.org/10.3390/molecules24040760
Sample preparation, Sequencing | Illumina
2019-02-14 | Developmental Cell
YAP Partially Reprograms Chromatin Accessibility to Directly Induce Adult Cardiogenesis In Vivo
Tanner O. Monroe, Matthew C. Hill, Yuka Morikawa, John P. Leach, Todd Heallen, Shuyi Cao, Peter H.L. Krijger, Wouter de Laat, Xander H.T. Wehrens, George G. Rodney, James F. Martin

https://doi.org/10.1016/j.devcel.2019.01.017
Sequencing | Illumina
2019-02-13 | Antonie van Leeuwenhoek
Cohnella candidum sp. nov., radiation-resistant bacterium from soil
SooHyun Maeng, Myung Kyum Kim, Jun Hwee Jang, Hana Yi, Gayathri Subramani

https://doi.org/10.1007/s10482-019-01233-3
Sequencing | PacBio
2019-02-08 | Biotechnology and Bioprocess Engineering
Genomic Characterization of a Newly Isolated Rhizobacteria Sphingomonas panacis Reveals Plant Growth Promoting Effect to Rice
Yeon-Ju Kim, Jaewon Lim, Johan Sukweenadhi, Ji Woong Seok, Sang-Won Lee, Jong Chan Park, Assiya Taizhanova, Donghyuk Kim, Deok Chun Yang

https://doi.org/10.1007/s12257-018-0386-2
Sequencing | PacBio
2019-01-16 | Microbial Genomics
Evolution of a clade of Acinetobacter baumannii global clone 1, lineage 1 via acquisition of carbapenem- and aminoglycoside-resistance genes and dispersion of ISAba1
Mohammad Hamidian, Jane Hawkey, Ryan Wick, Kathryn E. Holt, Ruth M. Hall

https://doi.org/10.1099%2Fmgen.0.000242
Sequencing | PacBio
2019-01-09 | Frontiers in Microbiology
“Candidatus Thermonerobacter thiotrophicus,” A Non-phototrophic Member of the Bacteroidetes/Chlorobi With Dissimilatory Sulfur Metabolism in Hot Spring Mat Communities
Vera Thiel, Amaya M. Garcia Costas, Nathaniel W. Fortney, Joval N. Martinez, Marcus Tank, Eric E. Roden, Eric S. Boyd, David M. Ward, Satoshi Hanada, Donald A. Bryant

https://doi.org/10.3389/fmicb.2018.03159
Sequencing | Illumina
2018-12-12 | Frontiers in Genetics
First Draft Genome for Red Sea Bream of Family Sparidae
Ga-Hee Shin, Younhee Shin, Myunghee Jung, Ji-man Hong, Sangmin Lee, Sathiyamoorthy Subramaniyam, Eun-Soo Noh, Eun-Ha Shin, Eun-Hee Park, Jung Youn Park, Young-Ok Kim, Kwnag-Min Choi, Bo-Hye Nam, Chan-Il Park

https://doi.org/10.3389/fgene.2018.00643
Sample preparation, Sequencing | PacBio, Illumina
2018-12-06 | Microbiology Resource Announcements
Complete Genome Sequence of WM99c, an Antibiotic-Resistant Acinetobacter baumannii Global Clone 2 (GC2) Strain Representing an Australian GC2 Lineage
Steven J Nigro, Ryan Wick, Kathryn E Holt, Ruth M Hall

https://doi.org/10.1128/mra.01199-18
Sequencing | PacBio
2018-11-24 | Aquaculture and Fisheries
Full-length mRNA sequencing in Saccharina japonica and identification of carbonic anhydrase genes
Yanhui Bi, Jiali Li, Zhigang Zhou

https://doi.org/10.1016/j.aaf.2018.11.002
Sequencing | PacBio
2018-11-22 | Plant Biotechnology Journal
Single-molecule real-time sequencing reveals diverse allelic variations in carotenoid biosynthetic genes in pepper (Capsicum spp.)
Hyo-Bong Jeong, Min-Young Kang, Ayoung Jung, Koeun Han, Joung-Ho Lee, Jinkwan Jo, Hea-Young Lee, Jong-Wook An, Suna Kim, Byoung-Cheorl Kang

https://doi.org/10.1111/pbi.13039
Sequencing | PacBio
2018-11-17 | Hereditas
De novo transcriptome assembly of brackish water flea Diaphanosoma celebensis based on short-term cadmium and benzo[a]pyrene exposure experiments
Bo-Mi Kim, Seunghyun Kang, Ryeo-Ok Kim, Jee-Hyun Jung, Kyun-Woo Lee, Jae-Sung Rhee, Young-Mi Lee

https://doi.org/10.1186/s41065-018-0075-3
Sequencing | Illumina
2018-10-23 | Mitochondrial DNA Part B
The complete chloroplast genome sequence of Coix lacryma-jobi L. (Poaceae), a cereal and medicinal crop
Sang-Ho Kang, Hyun Oh Lee, Myung Ju Shin, Nam-Hoon Kim, Beom-Soon Choi, Manu Kumar, Asjad Ali, Sang-Choon Lee, Chang-Kug Kim

https://doi.org/10.1080/23802359.2018.1507653
Sequencing | PacBio
2018-10-16 | International Journal of Molecular Sciences
Transcriptome Profiling of Two Ornamental and Medicinal Papaver Herbs
Jaehyeon Oh, Younhee Shin, In Jin Ha, Min Young Lee, Seok-Geun Lee, Byeong-Chul Kang, Dongsoo Kyeong, Dowan Kim

https://doi.org/10.3390/ijms19103192
Sequencing | PacBio
2018-10-10 | Cell Death & Disease
Increasing G9a automethylation sensitizes B acute lymphoblastic leukemia cells to glucocorticoid-induced death
Coralie Poulard, Estelle Baulu, Brian H. Lee, Miles A. Pufall, Michael R. Stallcup

https://doi.org/10.1038/s41419-018-1110-z
Sequencing | Illumina
2018-10-08 | The Journal of Clinical Investigation
ΔNp63-driven recruitment of myeloid-derived suppressor cells promotes metastasis in triple-negative breast cancer
Sushil Kumar, David W. Wilkes, Nina Samuel, Mario Andres Blanco, Anupma Nayak, Kevin Alicea-Torres, Christian Gluck, Satrajit Sinha, Dmitry Gabrilovich, Rumela Chakrabarti

https://doi.org/10.1172/JCI99673
Sequencing | Illumina
2018-10-01 | Current Gene Therapy
EZH2 RIP-seq Identifies Tissue-specific Long Non-coding RNAs
Yan Wang, Yinping Xie, Lili Li, Yuan He, Di Zheng, Pengcheng Yu, Ling Yu, Lixu Tang, Yibin Wang, Zhihua Wang

https://doi.org/10.2174/1566523218666181008125010
Sequencing | Illumina
2018-09-25 | GigaScience
The genome of common long-arm octopus Octopus minor
Bo-Mi Kim, Seunghyun Kang, Do-Hwan Ahn, Seung-Hyun Jung, Hwanseok Rhee, Jong Su Yoo, Jong-Eun Lee, SeungJae Lee, Yong-Hee Han, Kyoung-Bin Ryu, Sung-Jin Cho, Hyun Park, Hye Suck An

https://doi.org/10.1093/gigascience/giy119
Sequencing | PacBio
2018-09-20 | GigaScience
Exploring the genome and transcriptome of the cave nectar bat Eonycteris spelaea with PacBio long-read sequencing
Ming Wen, Justin H J Ng, Feng Zhu, Yok Teng Chionh, Wan Ni Chia, Ian H Mendenhall, Benjamin PY-H Lee, Aaron T Irving, Lin-Fa Wang

https://doi.org/10.1093/gigascience/giy116
Sequencing | PacBio
2018-09-03 | Microbial Cell Factories
Genome alterations associated with improved transformation efficiency in Lactobacillus reuteri
Laura Ortiz-Velez, Javiera Ortiz-Villalobos, Abby Schulman, Jee-Hwan Oh, Jan-Peter van Pijkeren, Robert A. Britton

https://doi.org/10.1186/s12934-018-0986-8
Sequencing | PacBio
2018-09-01 | Molecular Biology and Evolution
Genomic Analysis of Picochlorum Species Reveals How Microalgae May Adapt to Variable Environments
Fatima Foflonker, Devin Mollegard, Meichin Ong, Hwan Su Yoon, Debashish Bhattacharya

https://doi.org/10.1093/molbev/msy167
Sequencing | PacBio
2018-08-22 | BMC Genomics
Complete genome of streamlined marine actinobacterium Pontimonas salivibrio strain CL-TW6T adapted to coastal planktonic lifestyle
Byung Cheol Cho, Stephen C. Hardies, Gwang Il Jang, Chung Yeon Hwang

https://doi.org/10.1186/s12864-018-5019-9
Sample preparation, Sequencing | PacBio
2018-08-20 | International Journal of Systematic and Evolutionary Microbiology
Nitrosarchaeum koreense gen. nov., sp. nov., an aerobic and mesophilic, ammonia-oxidizing archaeon member of the phylum Thaumarchaeota isolated from agricultural soil
Man-Young Jung, Md. Arafat Islam, Joo-Han Gwak, Jong-Geol Kim, Sung-Keun Rhee

https://doi.org/10.1099/ijsem.0.002926
Sequencing | Illumina
2018-08-19 | Applied Microbiology and Biotechnology
2,3-Butanediol production by the non-pathogenic bacterium Paenibacillus brasilensis
Beatriz do Carmo Dias, Maria Eduarda do Nascimento Vitorino Lima, Renata Estebanez Vollu, Fabio Faria da Mota, Antonio Jorge Ribeiro da Silva, Aline Machado de Castro, Denise Maria Guimaraes Freire, Lucy Seldin

https://doi.org/10.1007/s00253-018-9312-y
Sequencing | PacBio
2018-08-15 | bioRxiv
Therapeutic effects of Hypoxia-Inducible Factor-1α (HIF-1α) on bone formation around implants in diabetic mice
Sang-Min Oh, Jin-Su Shin, Il-Koo Kim, Jae-Seung Moon, Jung-Ho Kim, Sang-Kyou Lee, Jae-Hoon Lee

https://doi.org/10.1101/392670
Sample preparation, Sequencing | Illumina
2018-08-13 | Nucleic Acids Research
Deep genome annotation of the opportunistic human pathogen Streptococcus pneumoniae D39
Jelle Slager, Rieza Aprianto, Jan-Willem Veening

https://doi.org/10.1093/nar/gky725
Sequencing, Bioinformatics | PacBio, Illumina
2018-08-02 | American Journal of Human Genetics
Argininosuccinate Lyase Deficiency Causes an Endothelial-Dependent Form of Hypertension
Jordan Kho, Xiaoyu Tian, Wing-Tak Wong, Terry Bertin, Ming-Ming Jiang, Shan Chen, Zixue Jin, Oleg A. Shchelochkov, Lindsay C. Burrage, Anilkumar K. Reddy, Hong Jiang, Reem Abo-Zahrah, Shuangtao Ma, Ping Zhang, Karl-Dimiter Bissig, Jean J. Kim, Sridevi Devaraj, George G. Rodney, Ayelet Erez, Nathan S. Bryan, Sandesh C.S. Nagamani, Brendan H. Lee

https://doi.org/10.1016%2Fj.ajhg.2018.07.008
Sequencing, Bioinformatics | Illumina
2018-08-01 | Genes & Development
Mutations in microRNA processing genes in Wilms tumors derepress the IGF2 regulator PLAG1
Kenneth S. Chen, Emily K. Stroup, Albert Budhipramono, Dinesh Rakheja, Diana Nichols-Vinueza, Lin Xu, Sarai H. Stuart, Abhay A. Shukla, Claudette Fraire, Joshua T. Mendell, James F. Amatruda

https://doi.org/10.1101%2Fgad.313783.118
Sequencing | Illumina
2018-07-11 | Cancer Reports
WT-CLS1 is a rhabdoid tumor cell line and can be inhibited by miR-16
Emily Kunce Stroup, Yunku Yeu, Albert Budhipramono, Tae Hyun Hwang, Dinesh Rakheja, Anat Erdreich-Epstein, Theodore W. Laetsch, James F. Amatruda, Kenneth S. Chen

https://doi.org/10.1002/cnr2.1110
Sequencing | Illumina
2018-07-01 | Investigative Ophthalmology & Visual Science
βA3/A1-crystallin affects circadian rhythm of the retinal pigmented epithelium through regulation of GSK3β expression
Nadezda Stepicheva, Peng Shang, Imran Ahmed Bhutto, J Samuel Zigler, Stacey L Hose, Debasish Sinha

https://iovs.arvojournals.org/article.aspx?articleid=2691717
Sequencing | Illumina
2018-06-18 | PNAS
Serine metabolism in the brain regulates starvation-induced sleep suppression in Drosophila melanogaster
Jun Young Sonn, Jongbin Lee, Min Kyung Sung, Hwajung Ri, Jung Kyoon Choi, Chunghun Lim, Joonho Choe

https://doi.org/10.1073/pnas.1719033115
Sample preparation, Sequencing | Illumina
2018-05-22 | Frontiers in Pharmacology
GPCRomics: GPCR Expression in Cancer Cells and Tumors Identifies New, Potential Biomarkers and Therapeutic Targets
Paul A. Insel, Krishna Sriram, Shu Z. Wiley, Andrea Wilderman, Trishna Katakia, Thalia McCann, Hiroshi Yokouchi, Lingzhi Zhang, Ross Corriden, Dongling Liu, Michael E. Feigin, Randall P. French, Andrew M. Lowy, Fiona Murray

https://doi.org/10.3389/fphar.2018.00431
Sequencing | Illumina
2018-05-04 | Inflammatory Bowel Diseases
Deep Resequencing of Ulcerative Colitis-Associated Genes Identifies Novel Variants in Candidate Genes in the Korean Population
Chang Mo Moon, MD, PhD, Seung Won Kim, PhD, Jae Bum Ahn, MD, Hyun Woo Ma, MS, Xiumei Che, MS, Tae Il Kim, MD, PhD, Won Ho Kim, MD, PhD, Jae Hee Cheon, MD, PhD

https://doi.org/10.1093/ibd/izy122
Sequencing | Illumina
2018-04-28 | Mitochondrial DNA Part B
The complete chloroplast genome of Chrysanthemum boreale (Asteraceae)
So Youn Won, Jae-A Jung, Jung Sun Kim

https://doi.org/10.1080/23802359.2018.1468225
Sequencing | PacBio
2018-04-27 | Mitochondrial DNA Part B
The complete mitochondrial genome sequence of Chrysanthemum boreale (Asteraceae)
So Youn Won, Jae-A Jung, Jung Sun Kim

https://doi.org/10.1080/23802359.2018.1468226
Sequencing | PacBio
2018-03-14 | Cell Host & Microbe
Inflammation-Modulated Metabolic Reprogramming Is Required for DUOX-Dependent Gut Immunity in Drosophila
Kyung-Ah Lee, Kyu-Chan Cho, Boram Kim, In-Hwan Jang, Kibum Nam, Young Eun Kwon, Myungjin Kim, Do Young Hyeon, Daehee Hwang, Jae-Hong Seol, Won-Jae Lee

https://doi.org/10.1016/j.chom.2018.01.011
Sequencing | Illumina
2018-02-22 | Cell
Dissecting the Causal Mechanism of X-Linked Dystonia-Parkinsonism by Integrating Genome and Transcriptome Assembly
Tatsiana Aneichyk, William T Hendriks, Rachita Yadav, David Shin, Dadi Gao, Christine A Vaine, Ryan L Collins, Aloysius Domingo, Benjamin Currall, Alexei Stortchevoi, Trisha Multhaupt-Buell, Ellen B Penney, Lilian Cruz, Jyotsna Dhakal, Harrison Brand, Carrie Hanscom, Caroline Antolik, Marisela Dy, Ashok Ragavendran, Jason Underwood, Stuart Cantsilieris, Katherine M Munson, Evan E Eichler, Patrick Acuna, Criscely Go, R Dominic G Jamora, Raymond L Rosales, Deanna M Church, Stephen R Williams, Sarah Garcia, Christine Klein, Ulrich Muller, Kirk C Wilhelmsen, H T Marc Timmers, Yechiam Sapir, Brian J Wainger, Daniel Henderson, Naoto Ito, Neil Weisenfeld, David Jaffe, Nutan Sharma, Xandra O Breakefield, Laurie J Ozelius, D Cristopher Bragg, Michael E Talkowski

https://doi.org/10.1016/j.cell.2018.02.011
Sequencing | PacBio
2018-02-01 | 한국해양과학기술원 보고서
해양 서식처별 일차생산자 다양성의 계절적 특성 연구
노재훈, 최동한, 양은찬, 이연정, 안성민, 최유리, 이호원, 김은영, 양원석, 조혜경, 김지훈, 현명진, 김지훈, 조성태, 유장연, 조성태

https://sciwatch.kiost.ac.kr/handle/2020.kiost/40864
Sequencing | Illumina
2018-01-05 | The FASEB Journal
GPR68, a proton-sensing GPCR, mediates interaction of cancer-associated fibroblasts and cancer cells
Shu Z. Wiley, Krishna Sriram, Wenjing Liang, Sarah E. Chang, Randall French, Thalia McCann, Jason Sicklick, Hiroshi Nishihara, Andrew M. Lowy, Paul A. Insel

https://doi.org/10.1096/fj.201700834R
Sample preparation, Sequencing | Illumina
2017-12-11 | PNAS
Disease onset in X-linked dystonia-parkinsonism correlates with expansion of a hexameric repeat within an SVA retrotransposon in TAF1
D. Cristopher Bragg, Kotchaphorn Mangkalaphiban, Christine A. Vaine, Nichita J. Kulkarni, David Shin, Rachita Yadav, Jyotsna Dhakal, Mai-Linh Ton, Anne Cheng, Christopher T. Russo, Mark Ang, Patrick Acuna, Criscely Go, Taylor N. Francoeur, Trisha Multhaupt-Buell, Naoto Ito, Ulrich Muller, William T. Hendriks, Xandra O. Breakefield, Nutan Sharma, Laurie J. Ozelius

https://doi.org/10.1073/pnas.1712526114
Sequencing | PacBio
2017-12-11 | Mitochondrial DNA Part B
The complete mitochondrial genome of Wonwhang (Pyrus pyrifolia)
Ho Yong Chung, So Yun Won, Sang-Ho Kang, Seong-Han Sohn, Jung Sun Kim

https://doi.org/10.1080/23802359.2017.1413300
Sequencing | PacBio
2017-12-07 | Scientific Reports
mTORC1 Signaling is a Critical Regulator of Postnatal Tendon Development
Joohyun Lim, Elda Munivez, Ming-Ming Jiang, I-Wen Song, Francis Gannon, Douglas R. Keene, Ronen Schweitzer, Brendan H. Lee, Kyu Sang Joeng

https://doi.org/10.1038/s41598-017-17384-0
Sequencing | Illumina
2017-11-28 | Journal of Genetics
Genome-based exome sequencing analysis identifies GYG1, DIS3L and DDRGK1 are associated with myocardial infarction in Koreans
Ji-Young Lee, Sanghoon Moon, Yun Kyoung Kim, Sang-Hak Lee, Bok-Soo Lee, Min-Young Park, Jeong Euy Park, Yangsoo Jang, Bok-Ghee Han

https://doi.org/10.1007/s12041-017-0854-z
Sequencing, Author | Illumina
2017-11-22 | bioRxiv
miR-16 Suppresses Growth of Rhabdoid Tumor Cells
Emily Kunce Stroup, Yunku Yeu, Albert Budhipramono, Tae Hyun Hwang, Dinesh Rakheja, Anat Erdreich-Epstein, Theodore W. Laetsch, James F. Amatruda, Kenneth S. Chen

https://doi.org/10.1101/219709
Sequencing | Illumina
2017-11-01 | Cells
Dupuytren's and Ledderhose Diseases in a Family with LMNA-Related Cardiomyopathy and a Novel Variant in the ASTE1 Gene
Michael V. Zaragoza, Cecilia H. H. Nguyen, Halida P. Widyastuti, ,Linda A. McCarthy, Anna Grosberg

https://doi.org/10.3390/cells6040040
Sequencing | Illumina
2017-10-20 | Frontiers in Microbiology
Complete Genome Sequence Analysis of Enterobacter sp. SA187, a Plant Multi-Stress Tolerance Promoting Endophytic Bacterium
Cristina Andres-Barrao, Feras F. Lafi, Intikhab Alam, Axel de Zelicourt, Abdul A. Eida, Ameerah Bokhari, Hanin Alzubaidy, Vladimir B. Bajic, Heribert Hirt, Maged M. Saad

https://doi.org/10.3389/fmicb.2017.02023
Sequencing | PacBio
2017-10-06 | Journal of Plant Biology
Characterization of the GRAS transcription factor SCARECROW-LIKE 28’s role in Arabidopsis root growth
Jeong-eun Choe, Bohye Kim, Eun Kyung Yoon, Sejeong Jang, Gyuree Kim, Souvik Dhar, Shin Ae Lee, Jun Lim

https://doi.org/10.1007/s12374-017-0112-1
Sequencing | Illumina
2017-09-20 | Molecules and Cells
Generation, Diversity Determination, and Application to Antibody Selection of a Human Naive Fab Library
Sangkyu Kim, Insoo Park, Seung Gu Park, Seulki Cho, Jin Hong Kim, Nagesh S. Ipper, Sun Shim Choi, Eung Suk Lee, Hyo Jeong Hong

https://doi.org/10.14348%2Fmolcells.2017.0106
Sequencing | Roche
2017-08-29 | Cell Discovery
Long read reference genome-free reconstruction of a full-length transcriptome from Astragalus membranaceus reveals transcript variants involved in bioactive compound biosynthesis
Jun Li, Yuka Harata-Lee, Matthew D Denton, Qianjin Feng, Judith R Rathjen, Zhipeng Qu, David L Adelson

https://doi.org/10.1038/celldisc.2017.31
Sequencing | PacBio
2017-07-06 | Genome Announcements
Complete Genome Sequence of Lactobacillus rhamnosus BFE5264, Isolated from Maasai Traditional Fermented Milk
Sang-Haeng Choi, Yosep Ji, Soyoung Park, Julius Mathara, Wilhelm Holzapfel, Jihee Kang

https://doi.org/10.1128/genomeA.00563-17
Sequencing | PacBio
2017-06-30 | Journal of Microbiology
Comparative genome analysis of the Flavobacteriales bacterium strain UJ101, isolated from the gut of Atergatis reticulatus
Jhung-Ahn Yang, Sung-Hyun Yang, Junghee Kim, Kae Kyoung Kwon, Hyun-Myung Oh

https://doi.org/10.1007/s12275-017-7172-2
Sequencing, Bioinformatics | PacBio
2017-03-01 | Plant Breeding and Biotechnology
A Glimpse of Panax ginseng Genome Structure Revealed from Ten BAC Clone Sequences Obtained by SMRT Sequencing Platform
Woojong Jang, Nam-Hoon Kim, Junki Lee, Nomar Espinosa Waminal, Sang-Choon Lee, Murukarthick Jayakodi, Hong-Il Choi, Jee Young Park, Jong-Eun Lee, Tae-Jin Yang

https://doi.org/10.9787/PBB.2017.5.1.25
Sequencing, Author | PacBio, Illumina
2017-02-14 | Protist
Diversity of the Photosynthetic Paulinella Species, with the Description of Paulinella micropora sp. nov. and the Chromatophore Genome Sequence for strain KR01
Duckhyun Lhee, Eun Chan Yang, Jong Im Kim, Takuro Nakayama, Giuseppe Zuccarello, Robert A. Andersen, Hwan Su Yoon

https://doi.org/10.1016/j.protis.2017.01.003
Sequencing | PacBio
2017-02-08 | Nature
The genome of Chenopodium quinoa
David E. Jarvis, Yung Shwen Ho, Damien J. Lightfoot, Sandra M. Schmockel, Bo Li, Theo J. A. Borm, Hajime Ohyanagi, Katsuhiko Mineta, Craig T. Michell, Noha Saber, Najeh M. Kharbatia, Ryan R. Rupper, Aaron R. Sharp, Nadine Dally, Berin A. Boughton, Yong H. Woo, Ge Gao, Elio G. W. M. Schijlen, Xiujie Guo, Afaque A. Momin, Sonia Negrao, Salim Al-Babili, Christoph Gehring, Ute Roessner, Christian Jung, Kevin Murphy, Stefan T. Arold, Takashi Gojobori, C. Gerard van der Linden, Eibertus N. van Loo, Eric N. Jellen, Peter J. Maughan, Mark Tester

https://doi.org/10.1038/nature21370
Sample preparation, Sequencing | PacBio, Illumina
2017-02-06 | PNAS
Intestinal NCoR1, a regulator of epithelial cell maturation, controls neonatal hyperbilirubinemia
Shujuan Chen, Wenqi Lu, Mei-Fei Yueh, Eva Rettenmeier, Miao Liu, Miles Paszek, Johan Auwerx, Ruth T. Yu, Ronald M. Evans, Kepeng Wang, Michael Karin, Robert H. Tukey

https://doi.org/10.1073/pnas.1700232114
Sequencing | Illumina
2017-01-25 | Developmental & Comparative Immunology
A proto-type galectin-2 from rock bream (Oplegnathus fasciatus): Molecular, genomic, and expression analysis, and recognition of microbial pathogens by recombinant protein
William Shanthakumar Thulasitha, Navaneethaiyer Umasuthan, Qiang Wan, Bo-Hye Nam, Tae-Wook Kang, Jehee Lee

https://doi.org/10.1016/j.dci.2017.01.023
Sequencing | Roche
2017-01-11 | Journal of Asia-Pasific Entomology
Identification of initial responsive genes to systemic dsRNA ingestion in the two-spotted spider mite, Tetranychus urticae Koch
Deok Ho Kwon, Ji Hyun Park, Si Hyeock Lee

https://doi.org/10.1016/j.aspen.2017.01.006
Sample preparation, Sequencing | Illumina
2016-11-18 | Cancer Gene Therapy
Hypomethylation reduced the aggressive potential of human malignant mesothelioma cells
N-Y Kim, M-C Kim, Y Kim

https://doi.org/10.1038/cgt.2016.57
Sequencing | Illumina
2016-11-03 | Genome Announcements
Finished Genome Sequence of the Highly Multidrug-Resistant Human Urine Isolate Citrobacter freundii Strain SL151
Tomasz A. Leski, Chris R. Taitt, Umaru Bangura, Rashid Ansumana, David A. Stenger, Zheng Wang, Gary J. Vora

https://doi.org/10.1128/genomeA.01225-16
Sample preparation, Sequencing | PacBio
2016-10-12 | Plant Biotechnology Reports
Construction of a draft reference transcripts of onion (Allium cepa) using long-read sequencing
Seong-Han Sohn, Yul-Kyun Ahn, Tae-Ho Lee, Jong-Eun Lee, Min-Hee Jeong, Chae-Hwa Seo, Romika Chandra, Young-Seok Kwon, Cheol-Woo Kim, Do-Sun Kim, So-Youn Won, Jung Sun Kim, Dongsu Choi

https://doi.org/10.1007/s11816-016-0409-4
Sequencing, Author | PacBio
2016-09-10 | Oral Diseases
Genetic analysis of hereditary gingival fibromatosis using whole exome sequencing and bioinformatics
J Hwang, Y-L Kim, S Kang, S Kim, S-O Kim, JH Lee, D-H Han

https://doi.org/10.1111/odi.12583
Sample preparation, Sequencing | Illumina
2016-08-04 | Genome Announcements
Complete Genome Sequence of the Proteorhodopsin-Containing Marine Flavobacterium Dokdonia donghaensis DSW-1T, Isolated from Seawater off Dokdo in the East Sea (Sea of Korea)
Kitae Kim, Soon-Kyeong Kwon, Jung-Hoon Yoon, Jihyun F. Kim

https://doi.org/10.1128/genomea.00804-16
Sequencing | PacBio
2016-07-29 | Systematic and Applied Microbiology
Evolutionary architecture of the infant-adapted group of Bifidobacterium species associated with the probiotic function
Min-Jung Kwak, Soon-Kyeong Kwon, Jae-Kyung Yoon, Ju Yeon Song, Jae-Gu Seo, Myung Jun Chung, Jihyun F. Kim

https://doi.org/10.1016/j.syapm.2016.07.004
Sequencing | PacBio
2016-07-26 | Journal of Cancer
An Integrated Analysis of the Genome-Wide Profiles of DNA Methylation and mRNA Expression Defining the Side Population of a Human Malignant Mesothelioma Cell Line
Myung-Chul Kim, Na-Yon Kim, Yu-Ri Seo, Yongbaek Kim

https://doi.org/10.7150%2Fjca.15423
Sample preparation, Sequencing | Illumina
2016-05-26 | Genome Announcements
Whole-Genome Sequence of Rummeliibacillus stabekisii Strain PP9 Isolated from Antarctic Soil
Fabio Faria da Mota, Renata Estebanez Vollu, Diogo Jurelevicius, Lucy Seldin

https://doi.org/10.1128/genomea.00416-16
Sequencing | PacBio
2016-05-12 | Genome Announcements
Complete Genome Sequence of Labrenzia sp. Strain CP4, Isolated from a Self-Regenerating Biocathode Biofilm
Zheng Wang, Brian J. Eddie, Anthony P. Malanoski, W. Judson Hervey IV, Baochuan Lin, Sarah M. Strycharz-Glaven

https://doi.org/10.1128/genomeA.00354-16
Sample preparation, Sequencing | PacBio
2016-04-15 | PLOS Genetics
Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding
Vij, S., Kuhl, H., Kuznetsova, I. S., Komissarov, A., Yurchenko, A. A., Van Heusden, P., Singh, S., Thevasagayam, N. M., Prakki, S. R., Purushothaman, K., Saju, J. M., Jiang, J., Mbandi, S. K., Jonas, M., Hin Yan Tong, A., Mwangi, S., Lau, D., Ngoh, S. Y., Liew, W. C., Shen, X., … Orban, L.

https://doi.org/10.1371/journal.pgen.1005954
Sequencing | PacBio
2016-04-14 | Biochemical and Biophysical Research Communications
A molluscan calreticulin ortholog from Haliotis discus discus: Molecular characterization and transcriptional evidence for its role in host immunity
H.M.V. Udayantha, G.I. Godahewa, S.D.N.K. Bathige, W.D. Niroshana Wickramaarachchi, Navaneethaiyer Umasuthan, Mahanama De Zoysa, Hyung-Bok Jeong, Bong-Soo Lim, Jehee Lee

https://doi.org/10.1016/j.bbrc.2016.04.056
Sequencing | Roche
2016-03-26 | Fish & Shellfish Immunology
Thioredoxin domain-containing protein 12 from Oplegnathus fasciatus: Molecular characterization, expression against immune stimuli, and biological activities related to oxidative stress
William Shanthakumar Thulasitha, Yucheol Kim, Navaneethaiyer Umasuthan, R.G.P.T. Jayasooriya, Gi-Young Kim, Bo-Hye Nam, Jae Koo Noh, Jehee Lee

https://doi.org/10.1016/j.fsi.2016.03.154
Sample preparation, Sequencing | Roche
2016-02-29 | BMC Gastroenterology
Does the intestinal microbial community of Korean Crohn’s disease patients differ from that of western patients?
Chang Soo Eun, Min-Jung Kwak, Dong Soo Han, A. Reum Lee, Dong Il Park, Suk-Kyun Yang, Yong Seok Kim, Jihyun F. Kim

https://doi.org/10.1186/s12876-016-0437-0
Sample preparation, Sequencing | Roche
2016-01-28 | Journal of Microbiology and Biotechnology
Toward Complete Bacterial Genome Sequencing Through the Combined Use of Multiple Next-Generation Sequencing Platforms
Haeyoung Jeong, Dae-Hee Lee, Choong-Min Ryu, Seung-Hwan Park

https://doi.org/10.4014/jmb.1507.07055
Sequencing | PacBio
2015-12-17 | Genome Announcements
Genome Sequence of Acinetobacter baumannii Strain D36, an Antibiotic-Resistant Isolate from Lineage 2 of Global Clone 1
Mohammad Hamidian, Jane Hawkey, Kathryn E. Holt, Ruth M. Hall

https://doi.org/10.1128/genomea.01478-15
Sequencing | PacBio
2015-12-12 | Marine Genomics
Complete genome sequence of Celeribacter marinus IMCC12053T, the host strain of marine bacteriophage P12053L
Jhung-Ahn Yang, Ilnam Kang, Mikyung Moon, Uh-Chan Ryu, Kae Kyoung Kwon, Jang-Cheon Cho, Hyun-Myung Oh

https://doi.org/10.1016/j.margen.2015.11.012
Sequencing | PacBio
2015-11-24 | BMJ Open
Discovery of URAT1 SNPs and association between serum uric acid levels and URAT1
Sung Kweon Cho, Soriul Kim, Jae-Yong Chung, Sun Ha Jee

https://doi.org/10.1136/bmjopen-2015-009360
Sequencing
2015-10-13 | Infection, Genetics and Evolution
A full genomic characterization of the development of a stable Small Colony Variant cell-type by a clinical Staphylococcus aureus strain
Long M.G. Bui, Stephen P. Kidd

https://doi.org/10.1016/j.meegid.2015.10.011
Sequencing | PacBio
2015-10-08 | Journal of Biotechnology
Complete genome sequence of the probiotic bacterium Bifidobacterium breve KCTC 12201BP isolated from a healthy infant
Min-Jung Kwak, Jae-Kyung Yoon, Soon-Kyeong Kwon, Myung-Jun Chung, Jae-Gu Seo, Jihyun F. Kim

https://doi.org/10.1016/j.jbiotec.2015.09.035
Sequencing | PacBio
2015-10-08 | Journal of Biotechnology
Complete genome sequence of Bifidobacterium longum KCTC 12200BP, a probiotic strain promoting the intestinal health
Soon-Kyeong Kwon, Min-Jung Kwak, Jae-Gu Seo, Myung Jun Chung, Jihyun F. Kim

https://doi.org/10.1016/j.jbiotec.2015.09.039
Sequencing | PacBio
2015-09-24 | Genome Announcements
Complete Genome Sequence of Marinobacter sp. CP1, Isolated from a Self-Regenerating Biocathode Biofilm
Zheng Wang, Brian J. Eddie, Anthony P. Malanoski, W. Judson Hervey IV, Baochuan Lin, Sarah M. Strycharz-Glaven

https://doi.org/10.1128/genomeA.01103-15
Sample preparation, Sequencing | PacBio
2015-08-30 | Journal of fish pathology
Genomic identification and spatial expression analysis of Rab-5C-like gene identified from rock bream(Oplegnathus fasciatus)
M.S.Mothishri, Navaneethaiyer Umasuthan, William Shanthakumar Thulasitha, Ilson Whang, Jehee Lee

https://doi.org/10.7847/jfp.2015.28.2.099
Sequencing | Roche
2015-06-17 | Polar Biology
A transcriptomic analysis of the response of the arctic pteropod Limacina helicina to carbon dioxide-driven seawater acidification
Hye Yeon Koh, Jun Hyuck Lee, Se Jong Han, Hyun Park, Seung Chul Shin, Sung Gu Lee

https://doi.org/10.1007/s00300-015-1738-4
Sample preparation, Sequencing | Illumina
2015-06-05 | Gene
Molecular profiling and functional insights of rock bream (Oplegnathus fasciatus) thioredoxin reductase 3-like molecule: investigation of its transcriptional modulation in response to live pathogen stress
Don Anushka Sandaruwan Elvitigala, Ilson Whang, Jehee Lee

https://doi.org/10.1016/j.gene.2015.06.007
Sequencing | Roche
2015-05-31 | Clinical Cancer Research
Genomic Alterations in the RB Pathway Indicate Prognostic Outcomes of Early-Stage Lung Adenocarcinoma
Seongmin Choi, Hyeong Ryul Kim, Chang Ohk Sung, Jongkyu Kim, Sukjun Kim, Sung-Min Ahn, Chang-min Choi, Sung-Min Chun, Eun Kyung Choi, Sang-We Kim, Yong-Hee Kim, Ji-Young Lee, Joon Seon Song, Deokhoon Kim, Farhan Haq, Sun Young Lee, Jong-eun Lee, Wang-rim Jung, Hye Yoon Jang, Eunho Yang, Charles Lee, Eunsil Yu, Gu Kong, Daehyun Baek, Se Jin Jang

https://doi.org/10.1158/1078-0432.CCR-14-0519
Sequencing | Illumina
2015-05-27 | Fish & Shellfish Immunology
Two variants of selenium-dependent glutathione peroxidase from the disk abalone Haliotis discus discus: Molecular characterization and immune responses to bacterial and viral stresses
S.D.N.K. Bathige, Navaneethaiyer Umasuthan, G.I. Godahewa, William Shanthakumar Thulasitha, Ilson Whang, Seung Hwan Won, Chul Kim, Jehee Lee

https://doi.org/10.1016/j.fsi.2015.05.028
Sequencing | Roche
2015-04-24 | Journal of Asia-Pacific Entomology
Comparison of the genome profiles between head and body lice
Jae Soon Kang, Yong-Jun Cho, Ju Hyeon Kim, Sang Hyeon Kim, Seungil Yoo, Seung-Jae Noh, Junhyung Park, Kyong Sup Yoon, J. Marshall Clark, Barry R. Pittendrigh, Jongsik Chun, Si Hyeock Lee

https://doi.org/10.1016/j.aspen.2015.04.010
Sample preparation, Sequencing | Illumina, Roche
2015-04-10 | Nature Communications
Pontin functions as an essential coactivator for Oct4-dependent lincRNA expression in mouse embryonic stem cells
Kyungjin Boo, Jinhyuk Bhin, Yoon Jeon, Joomyung Kim, Hi-Jai R. Shin, Jong-Eun Park, Kyeongkyu Kim, Chang Rok Kim, Hyonchol Jang, In-Hoo Kim, V. Narry Kim, Daehee Hwang, Ho Lee, Sung Hee Baek

https://doi.org/10.1038/ncomms7810
Sequencing | Illumina
2015-04-01 | Genes & Genomics
Molecular profile and expressional modulation of a Toll like receptor-1 homolog from rock bream (Oplegnathus fasciatus)
Don Anushka Sandaruwan Elvitigala, H. K. A. Premachandra, Sang-Yeob Yeo, Cheol Young Choi, Ilson Whang, Jehee Lee

https://doi.org/10.1007/s13258-015-0275-4
Sequencing | Roche
2015-03-12 | Genome Announcements
Genome Sequence of Acinetobacter baumannii Strain A1, an Early Example of Antibiotic-Resistant Global Clone 1
Kathryn E. Holt, Mohammad Hamidian, Johanna J. Kenyon, Matthew T. Wynn, Jane Hawkey, Derek Pickard, Ruth M. Hall

https://doi.org/10.1128/genomea.00032-15
Sequencing | PacBio
2015-02-10 | PLOS ONE
Genetic Investigation of Bisphosphonate-Related Osteonecrosis of Jaw (BRONJ) via Whole Exome Sequencing and Bioinformatics
Jee-Hwan Kim, Yong Jae Ko, Ji-young Kim, Yoonsoo Oh, Jihye Hwang, Sangjin Han, Sanguk Kim, Jae-Hoon Lee, Dong-Hoo Han

https://doi.org/10.1371/journal.pone.0118084
Sample preparation, Sequencing, Bioinformatics | Illumina
2015-01-29 | Genome Announcements
Complete Genome Sequence of the Bioluminescent Marine Bacterium Vibrio harveyi ATCC 33843 (392 [MAV])
Zheng Wang, W. Judson Hervey IV, Seongwon Kim, Baochuan Lin, Gary J. Vora

https://doi.org/10.1128/genomeA.01493-14
Sample preparation, Sequencing | PacBio
2015-01-21 | Conservation Genetics Resources
Isolation and characterization of polymorphic microsatellite loci from the chinstrap penguin, Pygoscelis antarctica
Seunghyun Kang, Jin-Woo Jung, Do Hwan Ahn, Jong Eun Lee, Jeong-Hoon Kim, Hyun Park

https://doi.org/10.1007/s12686-015-0424-8
Sample preparation, Sequencing, Author | Illumina
2015-01-01 | Turkish Journal of Agriculture and Forestry
Single nucleotide polymorphism discovery through Illumina-based transcriptome sequencing and mapping in lentil
HULYA YILMAZ TEMEL, DENIZ GOL, HILAL BETUL KAYA AKKALE, ABDULLAH KAHRIMAN, MUHAMMED BAHATTIN TANYOLAC

https://journals.tubitak.gov.tr/agriculture/vol39/iss3/12/
Sample preparation, Sequencing | Illumina
2014-12-24 | Fish & Shellfish Immunology
Mitochondrial peroxiredoxin 3 (Prx3) from rock bream (Oplegnathus fasciatus): Immune responses and role of recombinant Prx3 in protecting cells from hydrogen peroxide induced oxidative stress
G.I. Godahewa, Yucheol Kim, S.H.S. Dananjay, R.G.P.T. Jayasooriya, Jae Koo Noh, Jehee Lee, Mahanama De Zoysa

https://doi.org/10.1016/j.fsi.2014.12.011
Sequencing | Roche
2014-10-22 | Veterinary Immunology and Immunopathology
Two carboxypeptidase counterparts from rock bream (Oplegnathus fasciatus): molecular characterization, genomic arrangement and immune responses upon pathogenic stresses
G I Godahewa, W D Niroshana Wickramaarachchi, Ilson Whang, S D N K Bathige, Bong-Soo Lim, Cheol Young Choi, Mahanama De Zoysa, Jae Koo Noh, Jehee Lee

https://doi.org/10.1016/j.vetimm.2014.10.005
Sequencing | Roche
2014-09-25 | Genome Biology
The genome sequence of the Antarctic bullhead notothen reveals evolutionary adaptations to a cold environment
Seung Chul Shin, Do Hwan Ahn, Su Jin Kim, Chul Woo Pyo, Hyoungseok Lee, Mi-Kyeong Kim, Jungeun Lee, Jong Eun Lee, H William Detrich, John H Postlethwait, David Edwards, Sung Gu Lee, Jun Hyuck Lee, Hyun Park

https://doi.org/10.1186/s13059-014-0468-1
Sample preparation, Sequencing, Bioinformatics, Author | PacBio, Illumina, Roche
2014-06-28 | Journal of Coastal Life Medicine
First molluscan antimicrobial peptide hydramacin in Manila clam: molecular characterization and expression analysis
Youngdeuk Lee, Saranya Revathy K, Sukkyoung Lee, Ilson Whang, Chulhong Oh, Do-Hyung Kang, Gee-Wook Shin, Jehee Lee, Mahanama De Zoysa

http://dx.doi.org/10.12980/JCLM.2.201414J6
Sequencing | Roche
2014-06-12 | PLOS ONE
Investigation of Pathogenic Genes in Peri-Implantitis from Implant Clustering Failure Patients: A Whole-Exome Sequencing Pilot Study
Soohyung Lee, Ji-Young Kim, Jihye Hwang, Sanguk Kim, Jae-Hoon Lee, Dong-Hoo Han

https://doi.org/10.1371/journal.pone.0099360
Sample preparation, Sequencing | Illumina
2014-05-28 | Molecular Biology Reports
Molecular characterization and expressional affirmation of the beta proteasome subunit cluster in rock bream immune defense
Saranya Revathy Kasthuri, Navaneethaiyer Umasuthan, Ilson Whang, Bong-Soo Lim, Hyung-Bok Jung, Myung-Joo Oh, Sung-Ju Jung, Sang-Yeob Yeo, Sung Yeon Kim, Jehee Lee

https://doi.org/10.1007/s11033-014-3413-1
Sequencing | Roche
2014-05-05 | Fish & Shellfish Immunology
Identification of a novel molluscan short-type peptidoglycan recognition protein in disk abalone (Haliotis discus discus) involved in host antibacterial defense
H.K.A. Premachandra, Don Anushka Sandaruwan Elvitigala, Ilson Whang, Jehee Lee

https://doi.org/10.1016/j.fsi.2014.04.018
Sequencing | Roche
2014-05-03 | Hepatology
Genomic portrait of resectable hepatocellular carcinomas: Implications of RB1 and FGF19 aberrations for patient stratification
Sung-Min Ahn, Se Jin Jang, Ju Hyun Shim, Deokhoon Kim, Seung-Mo Hong, Chang Ohk Sung, Daehyun Baek, Farhan Haq, Adnan Ahmad Ansari, Sun Young Lee, Sung-Min Chun, Seongmin Choi, Hyun-Jeung Choi, Jongkyu Kim, Sukjun Kim, Shin Hwang, Young-Joo Lee, Jong-eun Lee, Wang-rim Jung, Hye Yoon Jang, Eunho Yang, Wing-Kin Sung, Nikki P. Lee, Mao Mao, Charles Lee, Jessica Zucman-Rossi, Eunsil Yu, Han Chu Lee, Gu Kong

https://doi.org/10.1002/hep.27198
Sample preparation, Sequencing, Microarray, Author | Illumina, Affymetrix
2014-03-02 | Nature Genetics
A recurrent inactivating mutation in RHOA GTPase in angioimmunoblastic T cell lymphoma
Hae Yong Yoo, Min Kyung Sung, Seung Ho Lee, Sangok Kim, Haeseung Lee, Seongjin Park, Sang Cheol Kim, Byungwook Lee, Kyoohyoung Rho, Jong-Eun Lee, Kwang-Hwi Cho, Wankyu Kim, Hyunjung Ju, Jaesang Kim, Seok Jin Kim, Won Seog Kim, Sanghyuk Lee, Young Hyeh Ko

https://doi.org/10.1038/ng.2916
Sample preparation, Sequencing, Author | Illumina
2014-02-24 | Allergy
Decreased diversity of nasal microbiota and their secreted extracellular vesicles in patients with chronic rhinosinusitis based on a metagenomic analysis
E-B Choi, S-W Hong, D-K Kim, S G Jeon, K-R Kim, S-H Cho, Y S Gho, Y-K Jee, Y-K Kim

https://doi.org/10.1111/all.12374
Sample preparation, Sequencing | Roche
2021-08-11 | Frontiers in Psychiatry
Possible Association of Polymorphisms in Ubiquitin Specific Peptidase 46 Gene With Post-traumatic Stress Disorder
Jun Ho Seo, Tae Yong Kim, Se Joo Kim, Jin Hee Choi, Hyung Seok So, Jee In Kang

https://doi.org/10.3389/fpsyt.2021.663647
Genotyping, Bioinformatics | SNaPShot assay
2021-07-30 | Cancer Science
Impact of UGT1A1 genotype on the efficacy and safety of irinotecan-based chemotherapy in metastatic colorectal cancer
Satoru Iwasa, Kei Muro, Satoshi Morita, Young Suk Park, Masato Nakamura, Masahito Kotaka, Tomohiro Nishina, Hiroshi Matsuoka, Joong Bae Ahn, Keun-Wook Lee, Yong Sang Hong, Sae Won Han, Sang-Hee Cho, Dong-Sheng Zhang, Wei-Jia Fang, Li Bai, Xiang-Lin Yuan, Ying Yuan, Yasuhide Yamada, Junichi Sakamoto, Tae Won Kim

https://doi.org/10.1111/cas.15092
Genotyping | TaqMan assay
2020-01-16 | Research Square
Genetic characteristics and diversity of Korean Jeju Black cattle by whole genome SNP markers
Alam MZ, Son HJ, Lee YM, Hanna LH, Riley D, Mannen H, Sasazaki S, Park SP, Kim JJ

https://doi.org/10.21203/rs.2.21018/v1
Sample preparation, Genotyping | Illumina, Bovine
2019-10-01 | Anxiety and Mood
Associations of Ubiquitin-Specific Protease Genes with Resilience and Social Anxiety in Healthy Youths
Jun Ho Seo, Chun Il Park, Se Joo Kim, Jee In Kang

http://doi.org/10.24986/anxmod.2019.15.2.122
Genotyping | SNaPShot assay
2019-09-20 | Communications Biology
Neutrophils homing into the retina trigger pathology in early age-related macular degeneration
Sayan Ghosh, Archana Padmanabhan, Tanuja Vaidya, Alan M. Watson, Imran A. Bhutto, Stacey Hose, Peng Shang, Nadezda Stepicheva, Meysam Yazdankhah, Joseph Weiss, Manjula Das, Santosh Gopikrishna, Aishwarya, Naresh Yadav, Thorsten Berger, Tak W. Mak, Shuli Xia, Jiang Qian, Gerard A. Lutty, Ashwath Jayagopal, J. Samuel Zigler Jr, Swaminathan Sethu, James T. Handa, Simon C. Watkins, Arkasubhra Ghosh, Debasish Sinha

https://doi.org/10.1038/s42003-019-0588-y
Sequencing | Illumina
2019-08-13 | Nutrition Research and Practice
Association of circulating 25-hydroxyvitamin D levels with hypertension and blood pressure values in Korean adults: A Mendelian randomization study on a subset of the Korea National Health and Nutrition Survey 2011-2012 population
So-Young Kwak, Yoonsu Cho, Hannah Oh, Min-Jeong Shin

https://doi.org/10.4162/nrp.2019.13.6.498
Genotyping | Fluidigm assay
2019-07-01 | Alzheimer's & Dementia
ATTENTION IS PREDICTED BY ALZHEIMER'S DISEASE POLYGENIC RISK SCORE IN TYPICALLY DEVELOPING CHILDREN MORE THAN CHILDREN WITH ATTENTION/DEFICIT-HYPERACTIVITY DISORDER
Woon Yoon, Tetyana Zayats, Hyo-Won Kim, Keejeong Park, Raymond Walter, Benjamin Neale

https://doi.org/10.1016/j.jalz.2019.06.3147
Genotyping
2019-04-30 | Clinical Psychopharmacology and Neuroscience
Predicting Behavior Problems in Korean Preschoolers: Interactions of the SLC6A4 Gene and Maternal Negative Affectivity
Junghee Ha, Hey Jung Jun, Hyewon Shin, Ick Joong Chung, Eunmie Park, Sung Kil Min, Eunjoo Kim

https://doi.org/10.9758%2Fcpn.2019.17.2.200
Genotyping | SNaPShot assay
2019-03-12 | Dementia and Geriatric Cognitive Disorders Extra
Cerebrospinal Fluid Biomarkers for the Diagnosis of Prodromal Alzheimer’s Disease in Amnestic Mild Cognitive Impairment
Jung Eun Park, Kyu Yeong Choi, Byeong C Kim, Seong-Min Choi, Min-Kyung Song, Jang Jae Lee, Jahae Kim, Ho-Chun Song, Hoo-Won Kim, Jung-Min Ha, Eun Hyun Seo, Woo Keun Song, Sung-Gyoo Park, Jung Sup Lee, Kun Ho Lee

https://doi.org/10.1159/000496920
Genotyping | SNaPShot assay
2019-01-07 | Psychiatry Investigation
Possible Association of the Ubiquitin-Specific Peptidase 46 Gene (USP46) with Affective Temperamental Traits in Healthy Korean Volunteers
Young Jun Boo, Chun Il Park, Hae Won Kim, Se Joo Kim, Jee In Kang

https://doi.org/10.30773%2Fpi.2018.10.02
Genotyping | SNaPShot assay
2018-09-23 | Nutrients
Genetic Association between Serum 25-Hydroxyvitamin D Levels and Lung Function in Korean Men and Women: Data from KNHANES 2011-2012
Clara Yongjoo Park, So-Young Kwak, Garam Jo, Min-Jeong Shin

https://doi.org/10.3390/nu10101362
Genotyping | TaqMan assay
2018-09-06 | BMC Pediatrics
Long-term effects of the SLC2A9 G844A and SLC22A12 C246T variants on serum uric acid concentrations in children
Hye Ah Lee, Bo Hyun Park, Eun Ae Park, Su Jin Cho, Hae Soon Kim, Hyesook Park

https://doi.org/10.1186/s12887-018-1272-y
Genotyping | TaqMan assay
2018-08-06 | The Journal of Clinical Endocrinology & Metabolism
Genome-Wide Association Study Reveals Distinct Genetic Susceptibility of Thyroid Nodules From Thyroid Cancer
Yul Hwangbo, Eun Kyung Lee, Ho-Young Son, Sun-Wha Im, Soo-Jung Kwak, Ji Won Yoon, Min Joo Kim, Jeongseon Kim, Hoon Sung Choi, Chang Hwan Ryu, You Jin Lee, Jong-Il Kim, Nam H Cho, Young Joo Park

https://doi.org/10.1210/jc.2017-02439
Genotyping | Fluidigm assay
2018-06-22 | Endocrine Journal
Association among genetic variants in the vitamin D pathway and circulating 25-hydroxyvitamin D levels in Korean adults: results from the Korea National Health and Nutrition Examination Survey 2011-2012
So-Young Kwak, Clara Yongjoo Park, Garam Jo, Oh Yoen Kim, Min-Jeong Shin

https://doi.org/10.1507/endocrj.ej18-0084
Genotyping | Fluidigm assay, TaqMan assay
2017-12-12 | International Journal of Chronic Obstructive Pulmonary Disease
Predicting treatable traits for long-acting bronchodilators in patients with stable COPD
Jieun Kang, Ki Tae Kim, Ji-Hyun Lee, Eun Kyung Kim, Tae-Hyung Kim, Kwang Ha Yoo, Jae Seung Lee, Woo Jin Kim, Ju Han Kim, Yeon-Mok Oh

https://doi.org/10.2147/COPD.S151909
Genotyping | Fluidigm assay
2017-10-10 | Arthritis Research & Therapy
Behcet's disease risk association fine-mapped on the IL23R-IL12RB2 intergenic region in Koreans
Eun Ha Kang, Sewon Kim, Min Young Park, Ji Yong Choi, In Ah Choi, Min Jung Kim, You-Jung Ha, Eun Young Lee, Yun Jong Lee, Eun Bong Lee, Changwon Kang, Yeong Wook Song

https://doi.org/10.1186/s13075-017-1435-5
Genotyping, Bioinformatics, Author | TaqMan assay
2017-09-11 | Oncotarget
Establishment and characterization of patient-derived xenograft models of gastrointestinal stromal tumor resistant to standard tyrosine kinase inhibitors
Young-Soon Na, Min-Hee Ryu, Changhoon Yoo, Ju-Kyung Lee, Jung Min Park, Chae-Won Lee, Sun Young Lee, Young-Kyoung Shin, Ja-Lok Ku, Sung-Min Ahn, Yoon-Koo Kang

https://doi.org/10.18632%2Foncotarget.20816
Genotyping
2017-09-07 | Psychoneuroendocrinology
Oxytocin receptor gene polymorphisms exert a modulating effect on the onset age in patients with obsessive-compulsive disorder
Jee In Kang, Hae Won Kim, Chul Hoon Kim, Eun Hee Hwang, Se Joo Kim

https://doi.org/10.1016/j.psyneuen.2017.09.011
Genotyping | SNaPShot assay
2017-07-24 | Journal of Ethnopharmacology
A standardized extract of the fruit of Hovenia dulcis alleviated alcohol-induced hangover in healthy subjects with heterozygous ALDH2: A randomized, controlled, crossover trial
Hoejin Kim, You Jin Kim, Hye Yun Jeong, Ji Yeon Kim, Eun-Kyung Choi, Soo Wan Chae, Oran Kwon

https://doi.org/10.1016/j.jep.2017.07.028
Genotyping | SNaPShot assay
2017-05-08 | Clinical and Translational Science
Exploration of Biomarkers for Amoxicillin/Clavulanate-Induced Liver Injury: Multi-Omics Approaches
J Lee, SC Ji, B Kim, S Yi, KH Shin, JY Cho, KS Lim, SH Lee, SH Yoon, JY Chung, KS Yu, HS Park, SH Kim, IJ Jang

https://doi.org/10.1111/cts.12425
Genotyping
2017-04-07 | Stroke
Bilirubin and Stroke Risk Using a Mendelian Randomization Design
Sun Ju Lee, Yon Ho Jee, Keum Ji Jung, Seri Hong, Eun Soon Shin, Sun Ha Jee

https://doi.org/10.1161/STROKEAHA.116.015083
Sample preparation, Genotyping, Author | K-chip
2017-03-10 | Drug Design, Development and Therapy
Pharmacokinetics and tolerability of DA-8031, a novel selective serotonin reuptake inhibitor for premature ejaculation in healthy male subjects
Dongseong Shin, SeungHwan Lee, Sojeong Yi, Seo Hyun Yoon, Joo-Youn Cho, Mi Young Bahng, In-Jin Jang, Kyung-Sang Yu

http://dx.doi.org/10.2147/DDDT.S126861
Genotyping | Affymetrix
2017-01-03 | Scientific Reports
Identification of genetic susceptibility loci for intestinal Behcet's disease
Seung Won Kim, Yoon Suk Jung, Jae Bum Ahn, Eun-Soon Shin, Hui Won Jang, Hyun Jung Lee, Tae Il Kim, Do Young Kim, Dongsik Bang, Won Ho Kim. Jae Hee Cheon

https://doi.org/10.1038/srep39850
Genotyping, Author | Affymetrix
2016-12-21 | The Korean Journal of Physiology & Pharmacology
Association study between OCTN1 functional haplotypes and Crohn's disease in a Korean population
Eun Suk Jung, Hyo Jin Park, Kyoung Ae Kong, Ji Ha Choi, Jae Hee Cheon

https://doi.org/10.4196/kjpp.2017.21.1.11
Genotyping | SNaPshot assay
2016-10-19 | Transfusion Medicine and Hemotherapy
Kinship Testing Based on SNPs Using Microarray System
Cho S., Seo H.J., Lee J., Yu H.J., Lee S.D.

https://doi.org/10.1159/000446322
Genotyping, Forensic | Fluidigm assay, AccuID
2016-01-27 | Respiration
Association between Polymorphisms in Bitter Taste Receptor Genes and Clinical Features in Korean Asthmatics
Yoon S.-Y., Shin E.-S., Park S.Y., Kim S., Kwon H.-S., Cho Y.S., Moon H.-B., Kim T.-B.

https://doi.org/10.1159/000443796
Genotyping, Author | TaqMan assay, SNaPShot assay
2016-01-06 | Epidemiology and Health
Impaired fasting glucose, single-nucleotide polymorphisms, and risk for colorectal cancer in Koreans
Keum Ji Jung, Miyong To Kim, Sun Ha Jee

https://doi.org/10.4178%2Fepih%2Fe2016002
Sample preparation, Genotyping | Fluidigm assay
2015-11-27 | Gut and Liver
The IL-1B Genetic Polymorphism Is Associated with Aspirin-Induced Peptic Ulcers in a Korean Ethnic Group
Jae Hee Cho, Ja Sung Choi, Song Wook Chun, Sangheun Lee, Ki Jun Han, Hee Man Kim

https://doi.org/10.5009%2Fgnl15129
Genotyping | SNaPShot assay
2015-06-18 | Oral Diseases
Genetic association between VEGF polymorphisms and BRONJ in the Korean population
H Choi, JH Lee, J-H Lee, J-H Kim

https://doi.org/10.1111/odi.12355
Sample preparation, Genotyping | SNaPShot assay
2015-05-09 | BMC Genetics
A colorectal cancer prediction model using traditional and genetic risk scores in Koreans
Keum Ji Jung, Daeyoun Won, Christina Jeon, Soriul Kim, Tae Il Kim, Sun Ha Jee, Terri H Beaty

https://doi.org/10.1186/s12863-015-0207-y
Sample preparation, Genotyping | Fluidigm assay
2015-03-23 | Chronobiology International
Associations between polymorphisms in the NR1D1 gene encoding for nuclear receptor REV-ERBα and circadian typologies
Jee In Kang, Chun Il Park, Kee Namkoong, Se Joo Kim

https://doi.org/10.3109/07420528.2015.1006327
Genotyping | SNaPShot assay
2015-02-20 | Gene Expression
Single Nucleotide Polymorphisms in HIF-1α Gene and Residual Ridge Resorption (RRR) of Mandible in Korean Population
J Paek, Y Oh, J Kim, J-H Lee

https://doi.org/10.3727%2F105221615X14181440065490
Sample preparation, Genotyping | SNaPShot assay
2014-11-01 | The Journal of Clinical Endocrinology & Metabolism
Common and Rare Variants in the Exons and Regulatory Regions of Osteoporosis-Related Genes Improve Osteoporotic Fracture Risk Prediction
Seung Hun Lee, Moo Il Kang, Seong Hee Ahn, Kyeong-Hye Lim, Gun Eui Lee, Eun-Soon Shin, Jong-Eun Lee, Beom-Jun Kim, Eun-Hee Cho, Sang-Wook Kim, Tae-Ho Kim, Hyun-Ju Kim, Kun-Ho Yoon, Won Chul Lee, Ghi Su Kim, Jung-Min Koh, Shin-Yoon Kim

https://doi.org/10.1210/jc.2014-1584
Genotyping, Author | Fluidigm assay
2014-09-30 | Clinical and experimental rheumatology
Single nucleotide polymorphisms in IL-10-mediated signalling pathways in Korean patients with Behcet's disease
E.H. Kang, J.Y. Choi, Y.J. Lee, E.Y. Lee, E.B. Lee, Y.W. Song

https://www.ncbi.nlm.nih.gov/pubmed/24428981
Genotyping | TaqMan assay
2014-09-30 | Xenobiotica
Effect of the potent CYP2D6 inhibitor sarpogrelate on the pharmacokinetics and pharmacodynamics of metoprolol in healthy male Korean volunteers
Doo-Yeoun Cho, Soo Hyeon Bae, Joeng Kee Lee, Jung Bae Park, Yang-Weon Kim, Sukhyang Lee, Euichaul Oh, Bom-Taeck Kim, Soo Kyung Bae

https://doi.org/10.3109/00498254.2014.967824
Sample preparation, Genotyping | SNaPShot assay
2014-05-27 | Hepatology
Prognostic impact of telomere maintenance gene polymorphisms on hepatocellular carcinoma patients with chronic hepatitis B
Seok Won Jung, Neung Hwa Park, Jung Woo Shin, Bo Ryung Park, Chang Jae Kim, Jong-Eun Lee, Eun-Soon Shin, Jeong A Kim, Young-Hwa Chung

https://doi.org/10.1002/hep.26655
Sample preparation, Genotyping, Author | SNaPShot assay
2014-03-01 | Annals of Laboratory Medicine
Identification of a De Novo Heterozygous Missense FLNB Mutation in Lethal Atelosteogenesis Type I by Exome Sequencing
Ga Won Jeon, Mi-Na Lee, Ji Mi Jung, Seong Yeon Hong, Young Nam Kim, Jong Beom Sin, Chang-Seok Ki

https://doi.org/10.3343/alm.2014.34.2.134
Sample preparation, Sequencing | Illumina
2014-02-01 | Retina
Genetic factors associated with response to intravitreal ranibizumab in Korean patients with neovascular age-related macular degeneration
Un Chul Park, Joo Young Shin, Sang Jin Kim, Eun Soon Shin, Jong Eun Lee, Linda C McCarthy, Paul J Newcombe, Chun-Fang Xu, Hum Chung, Hyeong Gon Yu

https://doi.org/10.1097/iae.0b013e3182979e1e
Sample preparation, Genotyping, Author | SNaShot assay, TaqMan assay
2014-01-05 | Journal of Biomaterials and Nanobiotechnology
Single Nucleotide Polymorphisms and Haplotypes in Vascular Endothelial Growth Factor Gene and Residual Ridge Resorption of Mandible in Korean Population
Jung-Hyun Song, Jae-Hoon Lee

http://dx.doi.org/10.4236/jbnb.2014.51006
Sample preparation, Genotyping | TaqMan assay
2023-04-26 | Journal of Animal Breeding and Genetics
Assessment of genomic breeding values and their accuracies for carcass traits in Jeju Black cattle using whole-genome SNP chip panels
Md Azizul Haque, Asif Iqbal, Haechang Bae, Seung Eun Lee, Sepil Park, Yun Mi Lee, Jong Joo Kim

https://doi.org/10.1111/jbg.12776
Microarray | Affymetrix
2023-03-23 | Research Square
Ethnicity- and Sex-Specific Genome-Wide Association Study on Parkinson's Disease
Sun Ju Chung, Kye Won Park, Ho-Sung Ryu, Eunsoon Shin, YoonGi Park, Sang Ryong Jeon, Seong Yoon Kim, JAE SEUNG KIM, Seong-Beom Koh

https://doi.org/10.21203/rs.3.rs-2649107/v1
Microarray, Bioinformatics, Author | K-Chip
2023-01-01 | Plants
Genome-Wide Association Study of Arabinoxylan Content from a 562 Hexaploid Wheat Collection
Myoung Hui Lee, Jinhee Park, Kyeong-Hoon Kim, Kyeong-Min Kim, Chon-Sik Kang, Go Eun Lee, Jun Yong Choi, Jiyoung Shon, Jong-Min Ko, Changhyun Choi

https://doi.org/10.3390/plants12010184
Microarray | Affymetrix, Wheat
2022-11-06 | International Journal of Molecular Sciences
Germplasm Screening Using DNA Markers and Genome-Wide Association Study for the Identification of Powdery Mildew Resistance Loci in Tomato
Jiyeon Park, Siyoung Lee, Yunseo Choi, Girim Park, Seoyeon Park, Byoungil Je, Younghoon Park

https://doi.org/10.3390/ijms232113610
Microarray | Tomato
2022-11-04 | Nature Communications
The contribution of common and rare genetic variants to variation in metabolic traits in 288,137 East Asians
Young Jin Kim, Sanghoon Moon, Mi Yeong Hwang, Sohee Han, Hye-Mi Jang, Jinhwa Kong, Dong Mun Shin, Kyungheon Yoon, Sung Min Kim, Jong-Eun Lee, Anubha Mahajan, Hyun-Young Park, Mark I. McCarthy, Yoon Shin Cho, Bong-Jo Kim

https://doi.org/10.1038/s41467-022-34163-2
Microarray, Author | K-Chip
2022-10-24 | Frontiers in Plant Science
Development of an inclusive 580K SNP array and its application for genomic selection and genome-wide association studies in rice
Kyu-Won Kim, Bhagwat Nawade, Jungrye Nam, Sang-Ho Chu, Jungmin Ha, Yong-Jin Park

https://doi.org/10.3389/fpls.2022.1036177
Microarray | Affymetrix, Oryza
2022-10-19 | Agronomy
A Novel Locus for Bakanae Disease Resistance, qBK4T, Identified in Rice
Sais-Beul Lee, Ji-Yoon Lee, Ju-Won Kang, Hyunggon Mang, Nkulu Rolly Kabange, Gi-Un Seong, Youngho Kwon, So-Myeong Lee, Dongjin Shin, Jong-Hee Lee, Jun-Hyeon Cho, Ki-Won Oh, Dong-Soo Park

https://doi.org/10.3390/agronomy12102567
Microarray | Affymetrix, Oryza
2022-10-14 | Cancer Letters
Sorbitol dehydrogenase induction of cancer cell necroptosis and macrophage polarization in the HCC microenvironment suppresses tumor progression
Su-Yeon Lee, Sanghwa Kim, Yeonhwa Song, Namjeong Kim, Joohwan No, Kang Mo Kim, Haeng Ran Seo

https://doi.org/10.1016/j.canlet.2022.215960
Microarray | Affymetrix
2022-06-28 | Journal of Plant Biology
A SHORTROOT-Mediated Transcriptional Regulatory Network for Vascular Development in the Arabidopsis Shoot
Kangseok Ko, Eun Kyung Yoon, Souvik Dhar, Jiyeong Oh, Jun Lim

https://doi.org/10.1007/s12374-022-09355-4
Microarray | Affymetrix, Arabidopsis
2022-06-25 | International Journal of Obesity
Dissecting the clinical relevance of polygenic risk score for obesity-a cross-sectional, longitudinal analysis
Eun Kyung Choe, Manu Shivakumar, Seung Mi Lee, Anurag Verma, Dokyoon Kim

https://doi.org/10.1038/s41366-022-01168-2
Microarray | K-Chip
2022-05-28 | Cancer Genetics
Discovery of BRCA1/BRCA2 founder variants by haplotype analysis
Won Kyung Kwon, Hyeok-Jae Jang, Jeong Eon Lee, Yeon Hee Park, Jai Min Ryu, Jonghan Yu, Ja-Hyun Jang, Jong-Won Kim

https://doi.org/10.1016/j.cancergen.2022.05.042
Microarray | K-Chip
2022-05-27 | Neurobiology of Aging
Structural covariance changes in major cortico-basal ganglia and thalamic networks in amyloid-positive patients with white matter hyperintensities
Sang Joon Son, Chang Hyung Hong, Na-Rae Kim, Jin Wook Choi, Hyun Woong Roh, Heirim Lee, Sang Won Seo, Seong Hye Choi, Eun-Joo Kim, Byeong C. Kim, Seong Yoon Kim, Jaeyoun Cheong, So Young Moon, Bumhee Park

https://doi.org/10.1016/j.neurobiolaging.2022.05.010
Microarray | K-Chip
2022-04-09 | Rice
Development of a Temperate Climate-Adapted indica Multi-stress Tolerant Rice Variety by Pyramiding Quantitative Trait Loci
Na-Hyun Shin, Jae-Hyuk Han, Kieu Thi Xuan Vo, Jeonghwan Seo, Ian Paul Navea, Soo-Cheul Yoo, Jong-Seong Jeon, Joong Hyoun Chin

https://doi.org/10.1186/s12284-022-00568-2
Microarray | Affymetrix, Oryza
2022-03-03 | Molecular Cancer Research
RKIP Induction Promotes Tumor Differentiation via SOX2 Degradation in NF2-Deficient Conditions
Jung-Hyun Cho, Soyoung Park, Soyeong Kim, So-Mi Kang, Tae-Gyun Woo, Min-Ho Yoon, Hyunkee Lee, Myeonggyo Jeong, Yeong Hye Park, Heegyu Kim, Young Taek Han, Young-Ger Suh, Bae-Hoon Kim, Yonghoon Kwon, Hwayoung Yun, Bum-Joon Park

https://doi.org/10.1158/1541-7786.MCR-21-0373
Microarray | Affymetrix
2022-02-04 | Scientific Reports
Leveraging deep phenotyping from health check-up cohort with 10,000 Korean individuals for phenome-wide association study of 136 traits
Eun Kyung Choe, Manu Shivakumar, Anurag Verma, Shefali Setia Verma, Seung Ho Choi, Joo Sung Kim, Dokyoon Kim

https://doi.org/10.1038/s41598-021-04580-2
Microarray | K-Chip
2022-02-01 | Frontiers in Cell and Developmental Biology
CD26 Inhibition Potentiates the Therapeutic Effects of Human Umbilical Cord Blood-Derived Mesenchymal Stem Cells by Delaying Cellular Senescence
Miyeon Kim, Jinyoung Go, Ji Hye Kwon, Hye Jin Jin, Yun Kyung Bae, Eun-Young Kim, Eun-Ju Chang, Soo Jin Choi, Seong Who Kim

https://doi.org/10.3389/fcell.2021.803645
Microarray | Affymetrix
2022-01-31 | Frontiers in Cardiovascular Medicine
Genetic Determinants of Visit-to-Visit Lipid Variability: Genome-Wide Association Study in Statin-Naive Korean Population
Jun-Bean Park, Eunsoon Shin, Jong-Eun Lee, Seung Jae Lee, Heesun Lee, Su-Yeon Choi, Eun Kyung Choe, Seung Ho Choi, Hyo Eun Park

https://doi.org/10.3389/fcvm.2022.811657
Microarray, Author | K-Chip
2022-01-24 | Scientific Reports
Plasma protein biomarker model for screening Alzheimer disease using multiple reaction monitoring-mass spectrometry
Yeongshin Kim, Jaenyeon Kim, Minsoo Son, Jihyeon Lee, Injoon Yeo, Kyu Yeong Choi, Hoowon Kim, Byeong C. Kim, Kun Ho Lee, Youngsoo Kim

https://doi.org/10.1038/s41598-022-05384-8
Microarray | K-Chip
2022-01-19 | Psychiatry Investigation
Baseline Clinical and Biomarker Characteristics of Biobank Innovations for Chronic Cerebrovascular Disease With Alzheimer’s Disease Study: BICWALZS
Hyun Woong Roh, Na-Rae Kim, Dong-gi Lee, Jae-Youn Cheong, Sang Won Seo, Seong Hye Cho, Eun-Joo Kim, Soo Hyun Cho, Byeong C. Kim, Seong Yoon Kim, Eun Young Kim, Jaerak Chang, Sang Yoon Lee, Dukyong Yoon, Jin Wook Choi, Young-Sil An, Hee Young Kang, Hyunjung Shin, Bumhee Park, Sang Joon Son, Chang Hyung Hong

https://doi.org/10.30773/pi.2021.0335
Microarray | K-Chip
2021-12-16 | Life Sciences in Space Research
Mimic microgravity effect on muscle transcriptome under ionizing radiation
Kim Ngan Tran, Jong-il Choi

https://doi.org/10.1016/j.lssr.2021.12.002
Microarray | Affymetrix, Rat
2021-09-30 | Scientific Reports
Cortical thickness is differently associated with ALDH2 rs671 polymorphism according to level of amyloid deposition
Yong Hyuk Cho, Heirim Lee, Na-Rae Kim, Jin Wook Choi, Hyun Woong Roh, Jae Ho Ha, Chang Hyung Hong, Sang Won Seo, Seong Hye Choi, Eun-Joo Kim, Byeong C. Kim, Seong Yoon Kim, Jaeyoun Cheong, Bumhee Park, Sang Joon Son

https://doi.org/10.1038/s41598-021-98834-8
Microarray | K-Chip
2021-09-02 | Translational and Clinical Pharmacology
Comprehensive analysis of important pharmacogenes in Koreans using the DMET™ platform
Byungwook Kim, Deok Yong Yoon, SeungHwan Lee, In-Jin Jang, Kyung-Sang Yu, Joo-Youn Cho, Jaeseong Oh

https://doi.org/10.12793%2Ftcp.2021.29.e14
Microarray | Affymetrix
2021-08-20 | British Journal of Ophthalmology
Genetic analysis of primary open-angle glaucoma-related risk alleles in a Korean population: the GLAU-GENDISK study
Yong Woo Kim, Yun Hwan Lee, Jin-Soo Kim, Jinho Lee, Yu Jeong Kim, Hyun Sub Cheong, Seok Hwan Kim, Ki Ho Park, Dong Myung Kim, Hyuk Jin Choi, Jin Wook Jeoung

https://doi.org/10.1136/bjophthalmol-2020-316089
Microarray | K-Chip
2021-08-17 | Scientific Reports
Genetic diversity analysis of Korean peanut germplasm using 48 K SNPs ‘Axiom_Arachis’ Array and its application for cultivar differentiation
Rizwana Begum Syed Nabi, Kwang-Soo Cho, Rupesh Tayade, Ki Won Oh, Myoung Hee Lee, Jung In Kim, Sungup Kim, Suk-Bok Pae, Eunyoung Oh

https://doi.org/10.1038/s41598-021-96074-4
Microarray | Affymetrix, Arachis
2021-07-14 | Frontiers in Plant Science
Chromosome Level Assembly of Homozygous Inbred Line ‘Wongyo 3115’ Facilitates the Construction of a High-Density Linkage Map and Identification of QTLs Associated With Fruit Firmness in Octoploid Strawberry (Fragaria × ananassa)
Hye-Eun Lee, Abinaya Manivannan, Sun Yi Lee, Koeun Han, Jun-Geol Yeum, Jinkwan Jo, Jinhee Kim, Il Rae Rho, Ye-Rin Lee, Eun Su Lee, Byoung-Cheorl Kang, Do-Sun Kim

https://doi.org/10.3389/fpls.2021.696229
Sample preparation, Microarray | Affymetrix, Strawberry
2021-06-19 | Genes & Genomics
New susceptible locus, rs9428555, is associated with pediatric-onset immunoglobulin A nephropathy and immunoglobulin A vasculitis in Koreans
Minho Lee, Gunhee Lee, Hee Gyung Kang, Jin-Soon Suh

https://doi.org/10.1007/s13258-021-01120-0
Microarray | Affymetrix
2021-06-01 | Drug Design, Development and Therapy
Pharmacokinetics, Tolerability and Pharmacogenetics of DA-8031 After Multiple Ascending Doses in Healthy Male Subjects
Sejung Hwang, Dae Young Lee, Joo-Youn Cho, Jae-Yong Chung, In-Jin Jang, Kyung-Sang Yu, SeungHwan Lee

https://doi.org/10.2147/dddt.s309763
Microarray | Affymetrix
2021-04-27 | Scientific Reports
Human WRN is an intrinsic inhibitor of progerin, abnormal splicing product of lamin A
So-mi Kang, Min-Ho Yoon, Su-Jin Lee, Jinsook Ahn, Sang Ah Yi, Ki Hong Nam, Soyoung Park, Tae-Gyun Woo, Jung-Hyun Cho, Jaecheol Lee, Nam-Chul Ha, Bum-Joon Park

https://doi.org/10.1038/s41598-021-88325-1
Microarray, Bioinformatics | Affymetrix
2021-03-08 | Cancers
Tumor Suppressor miR-584-5p Inhibits Migration and Invasion in Smoking Related Non-Small Cell Lung Cancer Cells by Targeting YKT6
Saet Byeol Lee, Young Soo Park, Jae Sook Sung, Jong Won Lee, Boyeon Kim, Yeul Hong Kim

https://doi.org/10.3390/cancers13051159
Microarray | Affymetrix
2021-03-04 | Cell Biology and Toxicology
Withaferin A mitigates metastatic traits in human oral squamous cell carcinoma caused by aberrant claudin-1 expression
Ji-Ae Shin, Lee-Han Kim, Mi Heon Ryu, So-Young Choi, Bohwan Jin, WonWoo Lee, Yun Chan Jung, Chi-Hyun Ahn, Min-Hye Ahn, Kyoung-Ok Hong, Neeti Swarup, Kunal Chawla, Se Chan Kang, Seong Doo Hong, Sung-Dae Cho

https://doi.org/10.1007/s10565-021-09584-2
Microarray | Affymetrix
2021-02-02 | Journal of Personalized Medicine
RMR-Related MAP2K6 Gene Variation on the Risk of Overweight/Obesity in Children: A 3-Year Panel Study
Myoungsook Lee, Yunkyoung Lee, Inhae Kang, Jieun Shin, Sungbin R. Sorn

https://doi.org/10.3390/jpm11020091
Microarray | Affymetrix
2021-01-12 | Cells
Identification of Cathepsin D as a Plasma Biomarker for Alzheimer's Disease
Jae-Whan Kim, Soon-Young Jung, Youngbin Kim, Hansol Heo, Chang-Hyung Hong, Sang-Won Seo, Seong-Hye Choi, Sang-Joon Son, Seongju Lee, Jaerak Chang

https://doi.org/10.3390/cells10010138
Microarray | K-Chip
2020-12-29 | International Journal of Molecular Medicine
Descriptive and functional characterization of epidermal growth factor-like domain 8 in mouse cortical thymic epithelial cells by integrated analysis of gene expression signatures and networks
Ye Seon Lim, Do-Young Lee, Hye-Yoon Kim, Yejin Ok, Seonyeong Hwang, Yuseok Moon, Sik Yoon

https://doi.org/10.3892/ijmm.2020.4837
Microarray | Affymetrix, Mouse
2020-12-24 | Agronomy
Mapping Quantitative Trait Loci for Yield Potential Traits in Wheat Recombinant Inbred Lines
Chon-Sik Kang, Young-Jun Mo, Kyeong-Min Kim, Kyeong-Hoon Kim, Jae-Buhm Chun, Chul-Soo Park, Seong-Woo Cho

https://doi.org/10.3390/agronomy11010022
Microarray | Affymetrix, Wheat
2020-11-24 | Endocrinology and Metabolism
Identification of Novel Genetic Variants Related to Trabecular Bone Score in Community-Dwelling Older Adults
Sung Hye Kong, Ji Won Yoon, Jung Hee Kim, JooYong Park, Jiyeob Choi, Ji Hyun Lee, A Ram Hong, Nam H. Cho, Chan Soo Shin

https://doi.org/10.3803%2FEnM.2020.735
Microarray | Affymetrix, K-Chip
2020-10-30 | EMBO Molecular Medicine
SATB2 drives glioblastoma growth by recruiting CBP to promote FOXM1 expression in glioma stem cells
Weiwei Tao, Aili Zhang, Kui Zhai, Zhi Huang, Haidong Huang, Wenchao Zhou, Qian Huang, Xiaoguang Fang, Briana C Prager, Xiuxing Wang, Qiulian Wu, Andrew E Sloan, Manmeet S Ahluwalia, Justin D Lathia, Jennifer S Yu, Jeremy N Rich, Shideng Bao

https://doi.org/10.15252/emmm.202012291
Microarray | Affymetrix
2020-10-15 | BMC Gastroenterology
The association of genetic polymorphisms with nonalcoholic fatty liver disease in a longitudinal study
Goh Eun Chung, Eunsoon Shin, Min-Sun Kwak, Jong In Yang, Jong-Eun Lee, Eun Kyung Choe & Jeong Yoon Yim

https://doi.org/10.1186/s12876-020-01469-8
Microarray, Author | K-Chip
2020-08-21 | Animal Bioscience
Genetic characteristics of Korean Jeju Black cattle with high density single nucleotide polymorphisms
M. Zahangir Alam, Yun-Mi Lee, Hyo-Jung Son, Lauren H. Hanna, David G. Riley, Hideyuki Mannen, Shinji Sasazaki, Se Pill Park, Jong-Joo Kim

https://doi.org/10.5713%2Fajas.19.0888
Sample preparation, Microarray | Affymetrix
2020-08-12 | Frontiers in Aging Neuroscience
The Aging Slopes of Brain Structures Vary by Ethnicity and Sex: Evidence From a Large Magnetic Resonance Imaging Dataset From a Single Scanner of Cognitively Healthy Elderly People in Korea
Yu Yong Choi, Jang Jae Lee, Kyu Yeong Choi, Eun Hyun Seo, IL Han Choo, Hoowon Kim, Min-Kyung Song, Seong-Min Choi, Soo Hyun Cho, Byeong C. Kim, Kun Ho Lee

https://doi.org/10.3389/fnagi.2020.00233
Microarray | K-Chip
2020-07-23 | Clinical and Translational Science
An Investigation of the Metabolism and Excretion of KD101 and Its Interindividual Differences: A Microtracing Mass Balance Study in Humans
Anhye Kim, Stephen R. Dueker, Jun Gi Hwang, Jangsoo Yoon, Sang-Won Lee, Hye Suk Lee, Byung-Yong Yu, Kyung-Sang Yu, Howard Lee

https://doi.org/10.1111/cts.12848
Microarray | Affymetrix
2020-07-03 | Agronomy
Transcriptional Modulation of Resistance against Xanthomonas oryzae pv. oryzae Korean Race K2 in japonica Rice
Marjohn C. Nino, Yong-Gu Cho

https://doi.org/10.3390/agronomy10070960
Microarray | Affymetrix, Rice
2020-06-01 | bioRxiv
Phenome-wide association study of a comprehensive health check-up database in a Korea population: Clinical application & trans-ethnic comparison
Eun Kyung Choe, Manu Shivakumar, Anurag Verma, Shefali Setia Verma, Seung Ho Choi, Joo Sung Kim, Dokyoon Kim

https://doi.org/10.1101/2020.05.31.126201
Microarray | K-Chip
2020-04-04 | International Journal of Molecular Sciences
A Machine Learning-Based Identification of Genes Affecting the Pharmacokinetics of Tacrolimus Using the DMETTM Plus Platform
Jeong-An Gim, Yonghan Kwon, Hyun A Lee, Kyeong-Ryoon Lee, Soohyun Kim, Yoonjung Choi, Yu Kyong Kim, Howard Lee

https://doi.org/10.3390/ijms21072517
Microarray | Affymetrix
2020-03-02 | Clinical and Translational Gastroenterology
A Novel Susceptibility Locus Near GRIK2 Associated With Erosive Esophagitis in a Korean Cohort
Eun Hyo Jin, Boram Park, Young Sun Kim, Eun Kyung Choe, Seung Ho Choi, Joo Sung Kim, Sung-Ae Jung

https://doi.org/10.14309%2Fctg.0000000000000145
Microarray | K-Chip
2020-01-07 | PLOS ONE
Genome-wide association study of metabolic syndrome in Korean populations
Seung-Won Oh, Jong-Eun Lee, Eunsoon Shin, Hyuktae Kwon, Eun Kyung Choe, Su-Yeon Choi, Hwanseok Rhee, Seung Ho Choi

https://doi.org/10.1371/journal.pone.0227357
Microarray, Author | K-Chip
2019-11-14 | Toxicology and Applied Pharmacology
CXCL14 downregulation in human keratinocytes is a potential biomarker for a novel in vitro skin sensitization test
Eunyoung Lee, Sungjin Ahn, Sun Hee Jin, Moonyoung Lee, Jeong Joo Pyo, Jeayoung C. Shin, Seungchan An, Jaehyoun Ha, Minsoo Noh

https://doi.org/10.1016/j.taap.2019.114828
Microarray | Affymetrix
2019-08-16 | Journal of Clinical Medicine
APOE Promoter Polymorphism-219T/G is an Effect Modifier of the Influence of APOE ε4 on Alzheimer’s Disease Risk in a Multiracial Sample
Choi, Kyu Yeong, Jang Jae Lee, Tamil Iniyan Gunasekaran, Sarang Kang, Wooje Lee, Jangho Jeong, Ho Jae Lim, Xiaoling Zhang, Congcong Zhu, So-Yoon Won, and et al.

https://doi.org/10.3390/jcm8081236
Microarray | K-Chip
2019-06-27 | Journal of Viral Hepatitis
GWAS identifying HLA-DPB1 gene variants associated with responsiveness to hepatitis B virus vaccination in Koreans: Independent association of HLA-DPB1*04:02 possessing rs1042169 G - rs9277355 C - rs9277356 A
Soie Chung, Eun Youn Roh, Boram Park, Yunhwan Lee, Sue Shin, Jong Hyun Yoon, Eun Young Song

https://doi.org/10.1111/jvh.13168
Sample preparation, Microarray | Affymetrix
2019-06-27 | Evolutionary Bioinformatics
Identifying Loci Under Positive Selection in Yellow Korean Cattle (Hanwoo)
Yi Li, Yun-Mi Lee, You-Sam Kim, Se-Pil Park, Jong-Joo Kim

https://doi.org/10.1177/1176934319859001
Sample preparation, Microarray | Affymetrix, Bovine
2019-05-14 | Scientific Reports
Genome-wide association study of right-sided colonic diverticulosis in a Korean population
Eun Kyung Choe, Jong-Eun Lee, Su Jin Chung, Sun Young Yang, Young Sun Kim, Eun-Soon Shin, Seung Ho Choi, Jung Ho Bae

https://doi.org/10.1038/s41598-019-43692-8
Microarray, Author | K-Chip
2019-03-28 | PLOS ONE
Genome-wide association study of coronary artery calcification in asymptomatic Korean populations
Su-Yeon Choi, Eunsoon Shin, Eun Kyung Choe, Boram Park, Heesun Lee, Hyo Eun Park, Jong-Eun Lee, Seung Ho Choi

https://doi.org/10.1371/journal.pone.0214370
Microarray, Author | K-Chip
2019-03-27 | Cellular Oncology
ABT-263 exhibits apoptosis-inducing potential in oral cancer cells by targeting C/EBP-homologous protein
In-Hyoung Yang, Ji-Youn Jung, Sung-Hyun Kim, Eun-Seon Yoo, Nam-Pyo Cho, Hakmo Lee, Jeong-Yeon Lee, Seong Doo Hong, Ji-Ae Shin, Sung-Dae Cho

https://doi.org/10.1007/s13402-019-00431-5
Sample preparation, Microarray | Affymetrix
2019-01-16 | Molecular Psychiatry
Negr1 controls adult hippocampal neurogenesis and affective behaviors
Kyungchul Noh, Hyunkyoung Lee, Tae-Yong Choi, Yeonhee Joo, Soo-Joeng Kim, Hyejin Kim, Jin Young Kim, Jeong Won Jahng, Soojin Lee, Se-Young Choi, Sung Joong Lee

https://doi.org/10.1038/s41380-018-0347-3
Microarray | Affymetrix, Mouse
2019-01-07 | Nutrients
Synergistic Effects of Sanghuang-Danshen Bioactives on Arterial Stiffness in a Randomized Clinical Trial of Healthy Smokers: An Integrative Approach to in silico Network Analysis
Yeni Lim, Tae-Jin Song, Woochang Hwang, Ji Yeon Kim, Doheon Lee, Yong-Jae Kim, Oran Kwon

https://doi.org/10.3390/nu11010108
Microarray | Affymetrix
2018-12-28 | Genomics & Informatics
Metabolic Syndrome Prediction Using Machine Learning Models with Genetic and Clinical Information from a Nonobese Healthy Population
Eun Kyung Choe, Hwanseok Rhee, Seungjae Lee, Eunsoon Shin, Seung-Won Oh, Jong-Eun Lee, Seung Ho Choi

https://doi.org/10.5808%2FGI.2018.16.4.e31
Microarray, Author | K-Chip
2018-12-21 | Biochemical Pharmacology
Schedule-dependent synergistic effects of 5-fluorouracil and selumetinib in KRAS or BRAF mutant colon cancer models
Hye Yeon Jang, Do Hyung Kim, Haeng Jung Lee, Won Dong Kim, Seog-Young Kim, Jung Jin Hwang, Seung Jin Lee, Dae Hyuk Moon

https://doi.org/10.1016/j.bcp.2018.12.017
Microarray | Affymetrix
2018-11-30 | Biochemical and Biophysical Research Communications
Integrative lipidomic and transcriptomic analysis of X-linked adrenoleukodystrophy reveals distinct lipidome signatures between adrenomyeloneuropathy and childhood cerebral adrenoleukodystrophy
Dong-Kyu Lee, Nguyen Phuoc Long, Juwon Jung, Tae Joon Kim, Euiyeon Na, Yun Pyo Kang, Sung Won Kwon, Jiho Jang

https://doi.org/10.1016/j.bbrc.2018.11.123
Sample preparation, Microarray | Affymetrix
2018-11-02 | Molecular Cancer Therapeutics
Loss of NF2 Induces TGFβ Receptor 1-mediated Noncanonical and Oncogenic TGFβ Signaling: Implication of the Therapeutic Effect of TGFβ Receptor 1 Inhibitor on NF2 Syndrome
Jung-Hyun Cho, Ah-Young Oh, Soyoung Park, So-mi Kang, Min-Ho Yoon, Tae-Gyun Woo, Shin-Deok Hong, Jihwan Hwang, Nam-Chul Ha, Ho-Young Lee, Bum-Joon Park

https://doi.org/10.1158/1535-7163.MCT-17-1210
Microarray, Bioinformatics | Affymetrix
2018-09-30 | Genomics & Informatics
Utility of Integrated Analysis of Pharmacogenomics and Pharmacometabolomics in Early Phase Clinical Trial: A Case Study of a New Molecular Entity
Jaeseong Oh, Sojeong Yi, Namyi Gu, Dongseong Shin, Kyung-Sang Yu, Seo Hyun Yoon, Joo-Youn Cho, In-Jin Jang

https://doi.org/10.5808%2FGI.2018.16.3.52
Microarray | Affymetrix
2018-08-08 | Journal of Clinical Medicine
Genetic Polymorphisms Associated with the Neutrophil-Lymphocyte Ratio and Their Clinical Implications for Metabolic Risk Factors
Boram Park, Eun Kyung Choe, Hae Yeon Kang, Eunsoon Shin, Sangwoo Lee, Sungho Won

https://doi.org/10.3390/jcm7080204
Microarray, Author | K-Chip
2018-06-25 | Diabetes
Nonsynonymous Variants in PAX4 and GLP1R Are Associated With Type 2 Diabetes in an East Asian Population
Soo Heon Kwak, Jeesoo Chae, Seungbok Lee, Sungkyoung Choi, Bo Kyung Koo, Ji Won Yoon, Jin-Ho Park, Belong Cho, Min Kyong Moon, Soo Lim, Young Min Cho, Sanghoon Moon, Young Jin Kim, Sohee Han, Mi Yeong Hwang, Yoon Shin Cho, Myung-Shik Lee, Hak C. Jang, Hyun Min Kang, Taesung Park, Nam H. Cho, Kyunga Kim, Jong-Il Kim, Kyong Soo Park

https://doi.org/10.2337/db18-0361
Microarray | Affymetrix
2018-05-14 | Nutrients
Association of Genetic Variation in the Epithelial Sodium Channel Gene with Urinary Sodium Excretion and Blood Pressure
Yoon Jung Yang, Jihye Kim, Chang Keun Kwock

https://doi.org/10.3390/nu10050612
Microarray | Affymetrix
2018-04-19 | BMJ Open
Health and Prevention Enhancement (H-PEACE): a retrospective, population-based cohort study conducted at the Seoul National University Hospital Gangnam Center, Korea
Changhyun Lee, Eun Kyung Choe, Ji Min Choi, Yunji Hwang, Young Lee, Boram Park, Su Jin Chung, Min-Sun Kwak, Jong-Eun Lee, Joo Sung Kim, Sue Kyung Park, Sang-Heon Cho

https://doi.org/10.1136/bmjopen-2017-019327
Microarray, Author | Affymetrix
2018-04-04 | International Journal of Radiation Biology
Gene expression profiling of rat livers after continuous whole-body exposure to low-dose rate of gamma rays
Kim Ngan Tran, Jong-il Choi

https://doi.org/10.1080/09553002.2018.1455009
Microarray | Affymetrix, Rat
2018-04-01 | Journal of Nanoscience and Nanotechnology
Alteration of MicroRNA Expression Profiles by Surface-Modified Gold Nanoparticles in Human Lung Adenocarcinoma Cells
Seon Young Choi, Pan Dong Ryu, Sang-Woo Joo, So Yeong Lee

https://doi.org/10.1166/jnn.2018.14395
Microarray, Bioinformatics | Affymetrix
2018-04-01 | Journal of the Korean Academy of Child and Adolescent Psychiatry
Genome-Wide Analysis Reveals Four Novel Loci for Attention-Deficit Hyperactivity Disorder in Korean Youths
Kukju Kweon, Eun-Soon Shin, Kee Jeong Park, Jong-Keuk Lee, Yeonho Joo, Hyo-Won Kim

https://doi.org/10.5765%2Fjkacap.2018.29.2.62
Microarray | Affymetrix
2018-02-22 | Cell Death & Differentiation
Oncogene-induced senescence mediated by c-Myc requires USP10 dependent deubiquitination and stabilization of p14ARF
Aram Ko, Su Yeon Han, Chel Hun Choi, Hanbyoul Cho, Min-Sik Lee, Soo-Youl Kim, Joon Seon Song, Kyeong-Man Hong, Han-Woong Lee, Stephen M. Hewitt, Joon-Yong Chung, Jaewhan Song

https://doi.org/10.1038/s41418-018-0072-0
Microarray | Affymetrix
2017-11-01 | Scientific Reports
SCARA5 plays a critical role in the commitment of mesenchymal stem cells to adipogenesis
Hyemin Lee, Yoo Jeong Lee, Hyeonjin Choi, Jo Woon Seok, Bo Kyung Yoon, Daeun Kim, Ji Yoon Han, Yoseob Lee, Hyo Jung Kim, Jae-woo Kim

https://doi.org/10.1038/s41598-017-12512-2
Sample preparation, Microarray | Affymetrix, Mouse
2017-07-25 | Behavior Genetics
Methylphenidate and Atomoxetine-Responsive Prefrontal Cortical Genetic Overlaps in “Impulsive” SHR/NCrl and Wistar Rats
Ike dela Pena, Irene Joy dela Pena, June Bryan de la Pena, Hee Jin Kim, Chan Young Shin, Doug Hyun Han, Bung-Nyun Kim, Jong Hoon Ryu, Jae Hoon Cheong

https://doi.org/10.1007/s10519-017-9861-3
Microarray | Affymetrix, Rat
2017-06-27 | American Journal of Reproductive Immunology
Identification of genes dysregulated by elevation of microRNA-210 levels in human trophoblasts cell line, Swan 71
Sejin Ahn, Eunbee Jeong, Jae Woong Min, Eunhee Kim, Sun Shim Choi, Chong Jae Kim, Deug-Chan Lee

https://doi.org/10.1111/aji.12722
Microarray | Affymetrix
2017-05-21 | Alimentary Pharmacology & Therapeutics
A novel K+ competitive acid blocker, YH4808, sustains inhibition of gastric acid secretion with a faster onset than esomeprazole: randomised clinical study in healthy volunteers
S. Yi, H. Lee, S. B. Jang, H. M. Byun, S. H. Yoon, J.-Y. Cho, I.-J. Jang, K.-S. Yu

https://doi.org/10.1111/apt.14148
Microarray | Affymetrix
2017-04-20 | Frontiers in Physiology
Analyses of MMP20 Missense Mutations in Two Families with Hypomaturation Amelogenesis Imperfecta
Youn Jung Kim, Jenny Kang, Figen Seymen, Mine Koruyucu, Koray Gencay, Teo Jeon Shin, Hong-Keun Hyun, Zang Hee Lee, Jan C.-C. Hu, James P. Simmer, Jung-Wook Kim

https://doi.org/10.3389/fphys.2017.00229
Microarray | Affymetrix
2017-04-19 | Genes, Brain and Behavior
Transcriptional profiling of SHR/NCrl prefrontal cortex shows hyperactivity-associated genes responsive to amphetamine challenge
I. J. I. dela Pena, I. dela Pena, J. B. de la Pena, H. J. Kim, A. Sohn, C. Y. Shin, D. H. Han, B.-N. Kim, J. H. Ryu, J. H. Cheong

https://doi.org/10.1111/gbb.12388
Microarray | Affymetrix, Rat
2017-04-13 | Oncotarget
A subset of microRNAs defining the side population of a human malignant mesothelioma cell line
Myung-Chul Kim, Na-Yon Kim, Yu-Ri Seo, Yongbaek Kim

https://doi.org/10.18632%2Foncotarget.17086
Sample preparation, Microarray, Sequencing | Affymetrix, Illumina
2017-03-17 | Oncotarget
Transcriptome profiling reveals miR-9-3p as a novel tumor suppressor in gastric cancer
Qingshun Meng, Longquan Xiang, Jingwei Fu, Xianqun Chu, Chunlin Wang, Bingzheng Yan

https://doi.org/10.18632%2Foncotarget.16310
Microarray | Affymetrix
2017-03-07 | Oncotarget
Ceruloplasmin as a prognostic marker in patients with bile duct cancer
In Woong Han, Jin-Young Jang, Wooil Kwon, Taesung Park, Yongkang Kim, Kyoung Bun Lee, Sun-Whe Kim

https://doi.org/10.18632/oncotarget.15995
Microarray | Affymetrix
2017-02-21 | Oncotarget
LMP1+ SLAMF1high cells are associated with drug resistance in Epstein-Barr virus-positive Farage cells
Heejei Yoon, Young Hyeh Ko

https://doi.org/10.18632%2Foncotarget.15600
Microarray | Affymetrix
2016-12-15 | Pharmacogenetics and Genomics
Characterization of ADME gene variation in 21 populations by exome sequencing
Daniel H. Hovelson, Zhengyu Xue, Matthew Zawistowski, Margaret G. Ehm, Elizabeth C. Harris, Sophie L. Stocker, Annette S. Gross, In-Jin Jang, Ichiro Ieiri, Jong-Eun Lee, Lon R. Cardon, Stephanie L. Chissoe, Goncalo Abecasis, Matthew R. Nelson

https://doi.org/10.1097%2FFPC.0000000000000260
Microarray, Author | Affymetrix
2016-10-27 | American Journal of Human Genetics
Recessive Mutations in ACPT, Encoding Testicular Acid Phosphatase, Cause Hypoplastic Amelogenesis Imperfecta
Figen Seymen, Youn Jung Kim, Ye Ji Lee, Jenny Kang, Tak-Heun Kim, Hwajung Choi, Mine Koruyucu, Yelda Kasimoglu, Elif Bahar Tuna, Koray Gencay, Teo Jeon Shin, Hong-Keun Hyun, Young-Jae Kim, Sang-Hoon Lee, Zang Hee Lee, Hong Zhang, Jan C-C. Hu, James P. Simmer, Eui-Sic Cho, Jung-Wook Kim

https://doi.org/10.1016/j.ajhg.2016.09.018
Microarray | Affymetrix
2016-09-21 | Toxicology and Applied Pharmacology
Cystathionine metabolic enzymes play a role in the inflammation resolution of human keratinocytes in response to sub-cytotoxic formaldehyde exposure
Eunyoung Lee, Hyoung-June Kim, Moonyoung Lee, Sun Hee Jin, Soo Hyun Hong, Seyeon Ahn, Sae On Kim, Dong Wook Shin, Seung-Taek Lee, Minsoo Noh

https://doi.org/10.1016/j.taap.2016.09.017
Sample preparation, Microarray | Affymetrix
2016-08-31 | Journal of Helath Informatics and Statistics
Analytical Performance Test Using the miRNA Chip of Bile Duct Cancer
Chang-Hee Lee, Jeong-Soo Lee, Jaehoon Lee, Jiyeon Heo, Mi Suk Noh

https://doi.org/10.21032/jhis.2016.41.3.330
Microarray | Affymetrix
2016-06-06 | Oncotarget
HIF2α/EFEMP1 cascade mediates hypoxic effects on breast cancer stem cell hierarchy
Ji-Hye Kwak, Na-Hee Lee, Hwa-Yong Lee, In-Sun Hong, Jeong-Seok Nam

https://doi.org/10.18632%2Foncotarget.9846
Sample preparation, Microarray | Affymetrix
2016-03-10 | Molecular Plant
Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue
Shin Ae Lee, Sejeong Jang, Eun Kyung Yoon, Jung-Ok Heo, Kwang Suk Chang, Ji Won Choi, Souvik Dhar, Gyuree Kim, Jeong-Eun Choe, Jae Bok Heo, Chian Kwon, Jae-Heung Ko, Yong-Sic Hwang, Jun Lim

https://doi.org/10.1016/j.molp.2016.02.009
Sample preparation, Microarray | Affymetrix, Arabidopsis
2016-02-16 | The Pharmacogenomics Journal
A pharmacogenomic study on the pharmacokinetics of tacrolimus in healthy subjects using the DMET™ Plus platform
Y Choi, F Jiang, H An, H J Park, J H Choi, H Lee

https://doi.org/10.1038/tpj.2015.99
Microarray | Affymetrix
2016-01-13 | Oral Diseases
Unexpected identification of a recurrent mutation in the DLX3 gene causing amelogenesis imperfecta
Y-J Kim, F Seymen, M Koruyucu, Y Kasimoglu, K Gencay, TJ Shin, H-K Hyun, ZH Lee, J-W Kim

https://doi.org/10.1111/odi.12439
Microarray | Affymetrix
2015-12-11 | International Journal of Oral Biology
MicroRNA-27 Promotes Odontoblast Differentiation via Wnt1 Signaling
Ji-Ho Cho, Su-Gwan Kim, Byung-Sun Park, Dae-San Go, Joo-Cheol Park, Do Kyung Kim

https://doi.org/10.11620/IJOB.2015.40.4.197
Sample preparation, Microarray | Affymetrix
2015-07-17 | Gene
Altered microRNA expression profile in hepatitis B virus-related hepatocellular carcinoma
Keon Uk Park, Young-Su Seo, Yun-Han Lee, Jungwook Park, Ilseon Hwang, Koo Jeong Kang, Jehyun Nam, Sang-Woo Kim, Jin Young Kim

https://doi.org/10.1016/j.gene.2015.07.053
Microarray | Affymetrix
2015-06-03 | Behavioural Brain Research
Common prefrontal cortical gene expression profiles between adolescent SHR/NCrl and WKY/NCrl rats which showed inattention behavior
Ike dela Pena, Minji Bang, Jinhee Lee, June Bryan de la Pena, Bung-Nyun Kim, Doug Hyun Han, Minsoo Noh, Chan Young Shin, Jae Hoon Cheong

https://doi.org/10.1016/j.bbr.2015.05.012
Sample preparation, Microarray | Affymetrix, Rat
2015-04-12 | Molecular Neurobiology
G9a-Mediated Regulation of OXT and AVP Expression in the Basolateral Amygdala Mediates Stress-Induced Lasting Behavioral Depression and Its Reversal by Exercise
Tae-Kyung Kim, Jung-Eun Lee, Ji-Eun Kim, Jin-Young Park, Juli Choi, Hannah Kim, Eun-Hwa Lee, Pyung-Lim Han

https://doi.org/10.1007/s12035-015-9160-z
Sample preparation, Microarray | Affymetrix
2015-01-13 | Applied and Environmental Microbiology
Phage-Encoded Colanic Acid-Degrading Enzyme Permits Lytic Phage Infection of a Capsule-Forming Resistant Mutant Escherichia coli Strain
Min Soo Kim, Young Deuk Kim, Sung Sik Hong, Kwangseo Park, Kwan Soo Ko, Heejoon Myung

https://doi.org/10.1128/AEM.02606-14
Microarray | Affymetrix, E. coli
2014-12-23 | PLOS ONE
The SNP rs3128965 of HLA-DPB1 as a Genetic Marker of the AERD Phenotype
Seung-Hyun Kim, Bo-Young Cho, Hyunna Choi, Eun-Soon Shin, Young-Min Ye, Jong-Eun Lee, Hae-Sim Park

https://doi.org/10.1371/journal.pone.0111220
Microarray, Genotyping, Author | Affymetrix, SNaPShot assay
2014-10-01 | Pharmacogenetics and Genomics
Korean, Japanese, and Chinese populations featured similar genes encoding drug-metabolizing enzymes and transporters: a DMET Plus microarray assessment
SoJeong Yi, Hyungmi An, Howard Lee, Sangin Lee, Ichiro Ieiri, Youngjo Lee, Joo-Youn Cho, Takeshi Hirota, Masato Fukae, Kenji Yoshida, Shinichiro Nagatsuka, Miyuki Kimura, Shin Irie, Yuichi Sugiyama, Dong Wan Shin, Kyoung Soo Lim, Jae-Yong Chung, Kyung-Sang Yu, In-Jin Jang

https://doi.org/10.1097/fpc.0000000000000075
Sample preparation, Microarray | Affymetrix
2014-08-28 | Archives of Pharmacal Research
Gene expression profiling in the striatum of amphetamine-treated spontaneously hypertensive rats which showed amphetamine conditioned place preference and self-administration
Ike dela Pena, June Bryan de la Pena, Bung-Nyun Kim, Doug Hyun Han, Minsoo Noh, Jae Hoon Cheong

https://doi.org/10.1007/s12272-014-0470-x
Sample preparation, Microarray | Affymetrix, Rat
2014-08-27 | Toxicology and Applied Pharmacology
Keratinocyte-derived IL-24 plays a role in the positive feedback regulation of epidermal inflammation in response to environmental and endogenous toxic stressors
Sun Hee Jin, Dalwoong Choi, Young-Jin Chun, Minsoo Noh

https://doi.org/10.1016/j.taap.2014.08.019
Sample preparation, Microarray | Affymetrix
2014-08-26 | Journal of Dermatological Science
Retinoic acid and hydroquinone induce inverse expression patterns on cornified envelope-associated proteins: Implication in skin irritation
Kyung Ah Cheong, Ha Jung Kim, Ji-Young Kim, Chang-Hyun Kim, Won-Suk Lim, Minsoo Noh, Ai-Young Lee

https://doi.org/10.1016/j.jdermsci.2014.08.003
Microarray | Affymetrix
2014-05-06 | Behavioral and Brain Functions
Prefrontal cortical and striatal transcriptional responses to the reinforcing effect of repeated methylphenidate treatment in the spontaneously hypertensive rat, animal model of attention-deficit/hyperactivity disorder (ADHD)
Ike dela Pena, Hee Jin Kim, Aeree Sohn, Bung-Nyun Kim, Doug Hyun Han, Jong Hoon Ryu, Chan Young Shin, Minsoo Noh, Jae Hoon Cheong

https://doi.org/10.1186/1744-9081-10-17
Sample preparation, Microarray | Affymetrix, Rat
2014-03-15 | Biochemical and Biophysical Research Communications
Downregulation of adenomatous polyposis coli by microRNA-663 promotes odontogenic differentiation through activation of Wnt/beta-catenin signaling
Jae-Sung Kim, Min-Gyeong Park, Seul Ah Lee, Sun-Young Park, Heung-Joong Kim, Sun-Kyoung Yu, Chun Sung Kim, Su-Gwan Kim, Ji-Su Oh, Jae-Seek You, Jin-Soo Kim, Yo-Seob Seo, Hong Sung Chun, Joo-Cheol Park, Do Kyung Kim

https://doi.org/10.1016/j.bbrc.2014.03.027
Sample preparation, Microarray | Affymetrix
2014-01-29 | Gene
MicroRNA-27 promotes the differentiation of odontoblastic cell by targeting APC and activating Wnt/β-catenin signaling
Min-Gyeong Park, Jae-Sung Kim, Sun-Young Park, Seul Ah Lee, Heung-Joong Kim, Chun Sung Kim, Jin-Soo Kim, Hong Sung Chun, Joo-Cheol Park, Do Kyung Kim

https://doi.org/10.1016/j.gene.2014.01.045
Microarray | Affymetrix
2013-10-07 | Oncogene
HOXB13 downregulates intracellular zinc and increases NF-κB signaling to promote prostate cancer metastasis
Y-R Kim, I-J Kim, T W Kang, C Choi, K K Kim, M S Kim, K I Nam, C Jung

https://doi.org/10.1038/onc.2013.404
Sample preparation, Microarray | Affymetrix
2013-07-30 | British Journal of Haematology
Genome-wide genotype-based risk model for survival in acute myeloid leukaemia patients with normal karyotype
Hangseok Choi, Chulwon Jung, Sang Kyun Sohn, Seonwoo Kim, Hyeoung-Joon Kim, Yeo-Kyeoung Kim, TaeHyung Kim, Zhaolei Zhang, Eun-Soon Shin, Jong-Eun Lee, Joon Ho Moon, Sung Hyun Kim, Kyoung Ha Kim, Yeung-Chul Mun, Hawk Kim, Jinny Park, Jhingook Kim, Dennis (D. H.) Kim

https://doi.org/10.1111/bjh.12492
Sample preparation, Microarray, Bioinformatics, Author | Affymetrix
2013-07-22 | Oncogene
Testican-1-mediated epithelial-mesenchymal transition signaling confers acquired resistance to lapatinib in HER2-positive gastric cancer
H-P Kim, S-W Han, S-H Song, E-G Jeong, M-Y Lee, D Hwang, S-A Im, Y-J Bang, T-Y Kim

https://doi.org/10.1038/onc.2013.285
Microarray | Affymetrix
2020-12-31 | Journal of the Korean Applied Science and Technology
Characterization of soil, vegetation, and soil fungal community in Cheongsu Gotjawal Forest
Jong-Shik Kim, Dae-Shin Kim

https://doi.org/10.12925/jkocs.2020.37.6.1489
Bioinformatics
2020-06-30 | Genes
Transcriptomic Analysis of Gill and Kidney from Asian Seabass (Lates calcarifer) Acclimated to Different Salinities Reveals Pathways Involved with Euryhalinity
Shubha Vij, Kathiresan Purushothaman, Prakki Sai Rama Sridatta, Dean R. Jerry

https://doi.org/10.3390/genes11070733
Bioinformatics
2018-06-18 | Translational Oncology
Molecular Characterization and Putative Pathogenic Pathways of Tuberous Sclerosis Complex-Associated Renal Cell Carcinoma
Jeong Hwan Park, Cheol Lee, Mee Soo Chang, Kwang soo Kim, Seong min Choi, Hyun jung Lee, Hyun-Seob Lee, Kyung Chul Moon

https://doi.org/10.1016/j.tranon.2018.05.010
Bioinformatics
2023-03-16 | Critical Care
Novel serum biomarkers for predicting neurological outcomes in postcardiac arrest patients treated with targeted temperature management
Hwan Song, Hyo Jin Bang, Yeonho You, Jung Soo Park, Changshin Kang, Hyo Joon Kim, Kyu Nam Park, Sang Hoon Oh, Chun Song Youn

https://doi.org/10.1186/s13054-023-04400-1
SIMOA | N4PA(GFAP, NF-L, Tau, UCH-L1), Serum
2022-01-13 | Biomedicines
Diagnostic Blood Biomarkers in Alzheimer's Disease
Jung Eun Park, Tamil Iniyan Gunasekaran, Yeong Hee Cho, Seong-Min Choi, Min-Kyung Song, Soo Hyun Cho, Jahae Kim, Ho-Chun Song, Kyu Yeong Choi, Jang Jae Lee, Zee-Yong Park, Woo Keun Song, Han-Seong Jeong, Kun Ho Lee, Jung Sup Lee, Byeong C. Kim

https://doi.org/10.3390/biomedicines10010169
SIMOA | Aβ42, NF-L, Plasma
2021-09-21 | Research Square
Diagnostic Fluid Biomarkers in Alzheimer's Disease: Blood and Cerebrospinal Fluid
Jung Eun Park, Tamil Iniyan Gunasekaran, Yeong Hee Cho, Seong-Min Choi, Min-Kyung Song, Soo Hyun Cho, Jahae Kim, Ho-Chun Song, Kyu Yeong Choi, Jang Jae Lee, Zee-Yong Park, Woo Keun Song, Han-Seong Jeong, Kun Ho Lee, Jung Sup Lee, Byeong C. Kim

https://doi.org/10.21203/rs.3.rs-763031/v2
SIMOA | Aβ42, NF-L, Plasma
2021-06-22 | Scientific Reports
The relationship of soluble TREM2 to other biomarkers of sporadic Alzheimer's disease
So-Hee Park, Eun-Hye Lee, Hyung-Ji Kim, Sungyang Jo, Sunju Lee, Sang Won Seo, Hyun-Hee Park, Seong-Ho Koh, Jae-Hong Lee

https://doi.org/10.1038/s41598-021-92101-6
Proteomics | SIMOA, CSF, Plasma, NF-L
2022-02-25 | PNAS
Precision targeting tumor cells using cancer-specific InDel mutations with CRISPR-Cas9
Taejoon Kwon, Jae Sun Ra, Soyoung Lee, In-Joon Baek, Keon Woo Khim, Eun A Lee, Eun Kyung Song, Daniyar Otarbayev, Woojae Jung, Yong Hwan Park, Minwoo Wie, Juyoung Bae, Himchan Cheng, Jun Hong Park, Namwoo Kim, Yuri Seo, Seongmin Yun, Ha Eun Kim, Hyo Eun Moon, Sun Ha Paek, Tae Joo Park, Young Un Park, Hwanseok Rhee, Jang Hyun Choi, Seung Woo Cho, Kyungjae Myung

https://doi.org/10.1073/pnas.2103532119
PDX | Glioblastoma
2021-04-08 | STAR Protocols
An optimized protocol for patient-derived xenograft in humanized mice to evaluate the role of IL-34 in immunotherapeutic resistance
Nanumi Han, Hye Yoon Jang, Naoki Hama, Takuto Kobayashi, Ryo Otsuka, Haruka Wada, Ken-ichiro Seino

https://doi.org/10.1016/j.xpro.2021.100460
PDX, Author | IL-34
2018-11-14 | Translational Oncology
Establishment of a Novel PDX Mouse Model and Evaluation of the Tumor Suppression Efficacy of Bortezomib Against Liposarcoma
Eun Byeol Jo, Doopyo Hong, Young Sang Lee, Hyunjoo Lee, Jae Berm Park, Sung JooKim

https://doi.org/10.1016/j.tranon.2018.09.015
PDX | Liposarcoma
2018-07-01 | Cancer Research
Establishment and molecular profiling of patient-derived xenograft models of Korean patients with primary lung cancer
Tae Ho Kim, Hyunjin Heo, Soo Jung Lee, Seungje Lee, Eunjoo Hwang, Jinseon Lee, Heekyoung Lee, Kevin Koo, Hanna Lee, Seungjae Lee, Hwanseok Rhee, Jong Eun Lee, Jhingook Kim

https://doi.org/10.1158/1538-7445.AM2018-1036
PDX, Author | NSCLC
2020-04-02 | Forensic Science International: Genetics
Large-scale identification of human bone remains via SNP microarray analysis with reference SNP database
Sohee Cho, Moon-Young Kim, Ji Hyun Lee, Hwan Young Lee, Soong Deok Lee

https://doi.org/10.1016/j.fsigen.2020.102293
Forensic | AccuID
2019-02-11 | Legal Medicine
Abnormal detection of Y-STR alleles at DYS385 from female DNA in forensic casework and interchromosomal insertional translocation of P4 palindrome (HSFY/DYS385) from AZFb region
Soon Hee Kim, Jin Myeong Lee, Young Se Hyun, Dong Ho Choi

https://doi.org/10.1016/j.legalmed.2019.02.002
Forensic | AccuID
2014-07-10 | Forensic Science International: Genetics
Forensic application of SNP-based resequencing array for individual identification
Sohee Cho, Hyung Jin Yu, Jisung Han, Yoonsoo Kim, Jihyun Lee, Soong Deok Lee

https://doi.org/10.1016/j.fsigen.2014.07.005
Forensic | AccuID
2014-02-04 | Korean Journal of Legal Medicine
Limitation of Regular Autosomal STR Testing for Paternity within an Isolated Population
Sohee Cho, Hyung Jin Yu, Hee Jin Seo, Jisung Han, Yoonsoo Kim, Soong Deok Lee

https://doi.org/10.7580/kjlm.2014.38.4.175
Forensic | AccuID
2022-02-15 | Cancer Research
Comprehensive Analysis of Alternative Splicing in Gastric Cancer Identifies Epithelial-Mesenchymal Transition Subtypes Associated with Survival
Yukyung Jun, Yun-Suhk Suh, SungHee Park, Jieun Lee, Jong-Il Kim, Sanghyuk Lee, Wan-Ping Lee, Olga Anczukow, Han-Kwang Yang, Charles Lee

https://doi.org/10.1158/0008-5472.CAN-21-2117
Others
2021-07-08 | Nature
Mapping the human genetic architecture of COVID-19
COVID-19 Host Genetics Initiative

https://doi.org/10.1038/s41586-021-03767-x
Data collection
2020-07-06 | Clinical Epigenetics
Reduced DNA methylation of the oxytocin receptor gene is associated with obsessive-compulsive disorder
Chun Il Park, Hae Won Kim, Sumoa Jeon, Jee In Kang, Se Joo Kim

https://doi.org/10.1186/s13148-020-00890-w
Sample preparation | Whole blood
2020-02-21 | PLOS ONE
A genome-wide association study on liver enzymes in Korean population
Ji Yeon Seo, Jong-Eun Lee, Goh Eun Chung, Eunsoon Shin, Min-Sun Kwak, Jong In Yang, Jeong Yoon Yim

https://doi.org/10.1371/journal.pone.0229374
Author
2020-01-30 | BMC Genomics
The effects of common structural variants on 3D chromatin structure
Omar Shanta, Amina Noor, Human Genome Structural Variation Consortium (HGSVC), Jonathan Sebat

https://doi.org/10.1186/s12864-020-6516-1
Author
2019-04-16 | Nature Communications
Multi-platform discovery of haplotype-resolved structural variation in human genomes
Chaisson, M.J.P., Sanders, A.D., Zhao, X. et al.

https://doi.org/10.1038/s41467-018-08148-z
Author
2018-06-13 | bioRxiv
Multi-platform discovery of haplotype-resolved structural variation in human genomes
Chaisson, M.J.P., Sanders, A.D., Zhao, X. et al

https://doi.org/10.1101/193144
Author
2018-04-20 | BMC Medical Genomics
An integrated clinical and genomic information system for cancer precision medicine
Yeongjun Jang, Taekjin Choi, Jongho Kim, Jisub Park, Jihae Seo, Sangok Kim, Yeajee Kwon, Seungjae Lee, Sanghyuk Lee

https://doi.org/10.1186/s12920-018-0347-9
Author
2017-09-28 | Yonsei Medical Journal
Identification and Functional Characterization of ST3GAL5 and ST8SIA1 Variants in Patients with Thyroid-Associated Ophthalmopathy
Hyo Jin Park, Ju Hee Kim, Jin Sook Yoon, Yang Ji Choi, Yoon-Hee Choi, Koung Hoon Kook, Ji Ha Choi

https://doi.org/10.3349%2Fymj.2017.58.6.1160
Sample preparation | Peripheral blood
2014-10-01 | Cancer Research
Exome and transcriptome profiling of lung adenocarcinoma in female never-smokers
Sanghyuk Lee, Pora Kim, Yukyung Jun, Charny Park, Suyeon Kim, Hee-Young Lee, Juhee Keum, Yeonhwa Jung, Yeonjoo Jung, Chaehwa Seo, Kyoohyoung Rho, Jong-Eun Lee, Wankyu Kim, Jaesang Kim, Jhingook Kim

https://doi.org/10.1158/1538-7445.AM2014-1532
Author
2013-10-23 | Allergy, Asthma & Immunology Research
The Interaction Between Allelic Variants of CD86 and CD40LG: A Common Risk Factor of Allergic Asthma and Rheumatoid Arthritis
So-Hee Lee, Eun-Bong Lee, Eun-Soon Shin, Jong-Eun Lee, Sang-Heon Cho, Kyung-Up Min, Heung-Woo Park

https://doi.org/10.4168/aair.2014.6.2.137
Author